Ntho007475.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024922.1:2492215-2494776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.1e-06 0.00062 20.2 4.5 1 23 337 359 337 359 0.99 2 15 0.00074 0.056 14.0 3.3 1 23 365 388 365 389 0.96 3 15 9.7e-06 0.00073 20.0 1.8 2 23 479 500 478 500 0.97 4 15 1.2e-05 0.00089 19.7 2.3 1 23 506 528 506 528 0.98 5 15 0.047 3.5 8.4 0.5 1 23 534 556 534 556 0.96 6 15 1.1e-06 8.5e-05 22.9 1.4 1 23 572 594 572 594 0.98 7 15 4.2e-06 0.00032 21.1 1.2 3 23 602 622 600 622 0.98 8 15 5.2e-05 0.0039 17.7 1.8 1 23 628 650 628 650 0.97 9 15 0.00024 0.018 15.6 0.2 1 23 656 678 656 678 0.99 10 15 6.9e-06 0.00052 20.4 0.3 1 23 684 707 684 707 0.94 11 15 2.1e-05 0.0016 18.9 1.3 1 23 713 735 713 735 0.98 12 15 0.00045 0.034 14.7 4.7 1 23 741 763 741 763 0.98 13 15 6.7e-06 0.00051 20.5 0.2 1 23 769 792 769 792 0.96 14 15 5.4e-06 0.00041 20.8 0.9 1 23 798 820 798 820 0.97 15 15 5e-06 0.00038 20.9 5.0 1 23 826 848 826 848 0.99
Sequence Information
- Coding Sequence
- ATGGATACAGCAACGACAATGAGCAACAAATGGATTCCCTCGAGGGTCGCGCTGGACGAAGAGCTGCCCGTCATGCTCGATGCTCCGTTTGCTTCGATCAAACAAGAAAATTATTACAAAACCAATTCGAAGGAGGACGTTACAAGGACGAACATGAGCGAATGGGATAAGTCCGTGAATCGCGGTACGATTAAGTCCATCGATAACAAAACTGGACCATACGCTAACGAAACTTGTGTTATTTCACCGATGAGAATAAATCACAGGGCGCAGGTCGATGTGATAGACATGCAAGCGCACGAATCCAATGGTTACAAACACGTTTTGATTTACGAAGAGCAATATTCCAAATTTATCGTTCTTAAGGCCTTGAAAAGCATAGATCCCAGCGAAGTAGCTACCAAACTAGTCGACATCGTAACGACGATCGGAGCGCCTCGTATTATTCAGAGCGGAAATGGTAGAGATTACGCGGAGCAAGTGGTAAGAGAGATTCGTATTTTATTGAGAGATTTTTGCGTCGTTCACGGCGACGCTACGAAAAACATTGAAGTACGTAGAAATTTCAAGAGTATATTGAAATCATGGATGTCCAAGCATCCGGGAAGAACGTTACACGATGGTCTCAGAACTGTTCAAGTTGCAGAAAATACAACGGCAAATTCGCGCAATGGCAAAGTACCGAGTCAATTGTTTTTTGGTCGAAACATTTGCGAGGATCTCAGAAGAGCGATAGGCGCCAAAGGACCCATGGGAAACGCTTTGTCGGAGGAAGAGACGATTCTGAAATCGAAGCAAGAGAAATTATCCGCGAACGATTCGAATGGAATCTCGATTGTAACTTCGATCGCCGAGATCGAAGGAATCGAAGAATTTCCGGGCACGTACGAGAACGTGAATAGGTTTAATGTTGAAAATGTCAAGAACGCATCGTCCGTCGCTCtagaaaaaattacgaaaatcgaCTCGAGCGAGGAAATTGCGCCGGCCGACTCTCAAAAGGATAACTTCAGATGTAAAATTTGTCAGAAACGATACATCAAACTGGGACATTTGCGCAATCACATGAAAACTCACACGAGAATCGGCAGCTTCGAGTGTACCATATGCTCCAAGTCGTATCGTTTATCGAGCCTTTATGACAAACACATGGAAAGGTTTCAtcatagaaagaagaaaaacgatgaCGATCGAAGCATCGAACGTTTACAACAGGGAATAACCAGTAACGAAGAGGAATATTCCAAAAGCGGCGCGAAAAGAGTTTGTCCGACGTACGAGAAATCCGAGGAAACAACGATCGaggaaaataacgagaaaaaatctTCTTTAAGGAGTTTCGGCAGGAAACCCATGAAACGTTCAAAATCTATGTACAGGAACGTTCGCAAGAAGGATTCAACGACATCGAAATTAAACGCGAATCCTCTTCTGGAATGTACATATTGCaagcaaaaatttaatttccccAGTGTCCTGAAGAGGCATATGCGTTCTCATACGAACGAGAGACCTTACGTGTGTCAGGTATGCAACAAAAGTTTTAAACAACTTGGACATCTCAGCCAACATTCGCTAACTCACACCGACTATCGTTCCTTCCAGTGTACGATATGCGCCATAAAATTCGATTCTCTGGACGCGCTGAAATTTCATTCGCAAACACACAAAGACGATCCTACGATATATCGTTCGAAAGAAATTTATCGTCTCTTTGAATGCGATAATTGCAAAAAAGTATTTACAACTAAGAGCGTTTTGGAGCGTCATATATTCACTCACACGCACGAACGACAATTCGGTTGTAAGATTTGCGGCAAAAGATTCAAACAGGCCGGTCACGTGAAGTCTCACATGCTCGTTCATACCGGCGAGCGTAAGTTCGCGTGTACCCTATGCTCGAAACGCTTCAGTCTCTCGAATTCCTTGAAAAAACATATGTACGTTCACAATGGCGAGAAGCCTTATCAATGCGACGTGTGCGGCGCGAGATTTCTCGAAAAACGAAATCTCAATGGTCACATGATGACGCACACGAACGAACGACCTTTTTCGTGCAAAATTTGCGGCAAGCGTTACACCTTGGCCGATACATTGAGACGTCACATAAGCGCCGCTCACGAGGACGGTCGTACTTATCAGTGCGAAATTTGCGCCAAAATGTTCAAACAACTTGCTCATCTTTCCGTACACAAGAAAGTTCATAACGACGACAGACCCTTTCAGTGTCATCTTTGCGAGAAAAACTTTAAGCACAAAAACGTTCTCAAATCACATTTGGCGATTCACGCGAACGTAAGACCTTTCGAGTGCGACGTCTGTAAAGCGACCTTcgtaagaaaaacaaatctGCAGACGCACATTGCCTCGGCGCATATGAACGAGCGCCCGTATGTTTGTACAATTTGCAACAAACGTTTTAAGCAGATTAGTCATTTAAACGGTCATATTGTCGTTCATAGCAATTCGATGCCGTATAAGTGTGATTTTTGCGATCGTCGATGCAATAGACTCGATAATTTGAAGAAACACATGAGACTACATGCGAAGAATAAGGAGTAA
- Protein Sequence
- MDTATTMSNKWIPSRVALDEELPVMLDAPFASIKQENYYKTNSKEDVTRTNMSEWDKSVNRGTIKSIDNKTGPYANETCVISPMRINHRAQVDVIDMQAHESNGYKHVLIYEEQYSKFIVLKALKSIDPSEVATKLVDIVTTIGAPRIIQSGNGRDYAEQVVREIRILLRDFCVVHGDATKNIEVRRNFKSILKSWMSKHPGRTLHDGLRTVQVAENTTANSRNGKVPSQLFFGRNICEDLRRAIGAKGPMGNALSEEETILKSKQEKLSANDSNGISIVTSIAEIEGIEEFPGTYENVNRFNVENVKNASSVALEKITKIDSSEEIAPADSQKDNFRCKICQKRYIKLGHLRNHMKTHTRIGSFECTICSKSYRLSSLYDKHMERFHHRKKKNDDDRSIERLQQGITSNEEEYSKSGAKRVCPTYEKSEETTIEENNEKKSSLRSFGRKPMKRSKSMYRNVRKKDSTTSKLNANPLLECTYCKQKFNFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCTICAIKFDSLDALKFHSQTHKDDPTIYRSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFACTLCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHMMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDDRPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYKCDFCDRRCNRLDNLKKHMRLHAKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057815;
- 90% Identity
- -
- 80% Identity
- -