Basic Information

Insect: Netelia virgata
Gene Symbol: klhl36
Assembly: GCA_951802705.1
Location: OX637866.1:695797-697802[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.1e-08 5.1e-05 23.1 0.0 2 38 203 239 202 245 0.87

2 4 2.3e-11 1.9e-08 34.0 0.0 5 41 256 292 253 296 0.86

3 4 0.0024 2 8.4 0.0 7 33 310 335 306 340 0.86

4 4 3e-11 2.5e-08 33.6 0.1 5 38 368 401 367 406 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.1e-08	5.1e-05	23.1	0.0	2	38	203	239	202	245	0.87
2	4	2.3e-11	1.9e-08	34.0	0.0	5	41	256	292	253	296	0.86
3	4	0.0024	2	8.4	0.0	7	33	310	335	306	340	0.86
4	4	3e-11	2.5e-08	33.6	0.1	5	38	368	401	367	406	0.95

Sequence Information

Coding Sequence: ATGTCTGCAACAATAGGGATAAACAGTCAACCTCATATCGAGGAGAGTTGCTGCTTCAAATGGACGGATTATCAGGATCATCTGTCGGACGTTGTACGACAGCTTCTCGAGGAGGAGTGCATGGTCGACGTAACCCTCGTTGCAGAAAGGGAACGTATACAAGCACATCGAATCGTGTTGTGCTCTTGCAGTACTTTGTTTCAAGAAATATTAAGCCAGACGAACGATGAACATTCGACGATAATACTGAGCGATATATCGGCACAGGATATGCGTTCCATAGTGGAATTTAGCTATCATGGAGAAGTTAGAATTCCGGTTGAAAATATCAGCAACCTATTGGAGGCTGCTCACTCGCTCAAAATTTGTGGTCTCATGGAGATCGATGGATTGGACGAGAACGATGGAATTATCAGTACAAAAGATATTGGCGAGGACAGTTCGGATCCTCTTGCTGATTTCGAAGAATCTGGCAACAACACGACTGAATCTCTAGAGAAGCAACTATCGTACAAAGATGTGAGGAGTAGTTGCGAAGGAATGGACAAGGTTTCATCcagtaaaaagagaaaacgtcGAAAGGAAGCCCCAAAACGAGAGTACAACGAAGAGATGCTTCTAACGGCTATAAATCACGTCAGGTCGGGTTGTACTCTTGTGGAGGCAGCCACAAGGAACAATGTACCACGTTCGACCCTGTACATGAGAGCCAAGGCTCTTGGAATACAATTGAACGCTTCGAGAAACGAATATCCGGCTGAATGTATGAAAGCTGCGATCGAGGCCGTTATCGCCGGTTTGAGCTTGCAGCACGCTTccgagaaatttttcatacCTAAAACCGTACTTTGGCGACGTATGCAAAAAGAGGGCTATCAGATATTACGCACGGAAGTCAAACGGCCCTATGATGCTGAGAAGAGAGAGGCAGCTGTTAAAGCTCTCCAACGAGGTGAAAATCTAACAAAAGTTGCACAGGAATTTCAGataccaaaaacgacgttGTTTCGTGACAAAGCGAAACTAGTGGACGAGGGCAAATTACCAGAATCTTtttggaaaaaacgaaaaaccggAGACGAAGCtgttaaaaaattacgtcTCGAAGAAGCAGTTGCCGCATGTAAAGGTGGAAGAATGTCCCAAGCTGCTGCATCTATGGCATATAGTATACCTAAAACTACGATATGGCGAAGGTTACAAGCGGATGGAAAAAATTCCGAGCGTGTCGCAGCCTTGAGAGATACGGAAGAGGAAATTTGTGGCGACGACGATAAGAACGATCAAAATGCTGCCGAATTTGCACTTTGCGAGGTACCATCGGAAATTCCTATAACATACATAGATCAAAATCTACCGGCAGATTCTGTGATAATATTGACAACCGAAGATGTAGAGGGTCTCAATCTAGGGGAGGGCAGACAGATAATCGTCAATCAAGATTGCGGAGAAGAATATGTTCCTTGTTCTCTGAGCATATCTGACAACACTATGAGCTCCGACTATCAGACAGCGGAGAGTTAA
Protein Sequence: MSATIGINSQPHIEESCCFKWTDYQDHLSDVVRQLLEEECMVDVTLVAERERIQAHRIVLCSCSTLFQEILSQTNDEHSTIILSDISAQDMRSIVEFSYHGEVRIPVENISNLLEAAHSLKICGLMEIDGLDENDGIISTKDIGEDSSDPLADFEESGNNTTESLEKQLSYKDVRSSCEGMDKVSSSKKRKRRKEAPKREYNEEMLLTAINHVRSGCTLVEAATRNNVPRSTLYMRAKALGIQLNASRNEYPAECMKAAIEAVIAGLSLQHASEKFFIPKTVLWRRMQKEGYQILRTEVKRPYDAEKREAAVKALQRGENLTKVAQEFQIPKTTLFRDKAKLVDEGKLPESFWKKRKTGDEAVKKLRLEEAVAACKGGRMSQAAASMAYSIPKTTIWRRLQADGKNSERVAALRDTEEEICGDDDKNDQNAAEFALCEVPSEIPITYIDQNLPADSVIILTTEDVEGLNLGEGRQIIVNQDCGEEYVPCSLSISDNTMSSDYQTAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056711;
90% Identity: iTF_01056711;
80% Identity: iTF_01057779;