Basic Information

Insect: Netelia thomsonii
Gene Symbol: Prdm15
Assembly: GCA_964017225.1
Location: OZ024924.1:27919104-27922303[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.6e-05 0.0057 17.2 1.3 1 23 330 352 330 352 0.98

2 11 0.00045 0.034 14.7 4.9 1 23 356 378 356 378 0.98

3 11 0.00026 0.02 15.5 3.0 1 23 383 405 383 405 0.96

4 11 0.00093 0.071 13.7 1.4 1 23 486 508 486 508 0.97

5 11 0.00083 0.063 13.9 2.6 1 23 558 580 558 580 0.98

6 11 0.0031 0.23 12.1 1.2 2 23 588 609 588 609 0.98

7 11 1.2e-06 8.8e-05 22.9 2.1 1 23 620 642 620 642 0.96

8 11 7.3e-05 0.0055 17.2 1.0 1 23 648 670 648 670 0.98

9 11 0.00019 0.014 15.9 0.7 1 23 676 698 676 698 0.98

10 11 5.6e-06 0.00042 20.7 2.0 1 23 704 726 704 726 0.96

11 11 0.0001 0.0075 16.8 0.3 1 22 732 753 732 753 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.6e-05	0.0057	17.2	1.3	1	23	330	352	330	352	0.98
2	11	0.00045	0.034	14.7	4.9	1	23	356	378	356	378	0.98
3	11	0.00026	0.02	15.5	3.0	1	23	383	405	383	405	0.96
4	11	0.00093	0.071	13.7	1.4	1	23	486	508	486	508	0.97
5	11	0.00083	0.063	13.9	2.6	1	23	558	580	558	580	0.98
6	11	0.0031	0.23	12.1	1.2	2	23	588	609	588	609	0.98
7	11	1.2e-06	8.8e-05	22.9	2.1	1	23	620	642	620	642	0.96
8	11	7.3e-05	0.0055	17.2	1.0	1	23	648	670	648	670	0.98
9	11	0.00019	0.014	15.9	0.7	1	23	676	698	676	698	0.98
10	11	5.6e-06	0.00042	20.7	2.0	1	23	704	726	704	726	0.96
11	11	0.0001	0.0075	16.8	0.3	1	22	732	753	732	753	0.96

Sequence Information

Coding Sequence: ATGGCCATGAATACAAACTATTTTGACCCGCCGATTAATATAGACAGAGTATGTAGAATTTGTCTACTCGAGAGTACCAATTTAACATCGATATTCTGTACCGAACAAGACGTCGACGATTTTTCCGGTCTCTCGCATAAGATTCAAGTTTGCGGATCGATAGAAATACACGAAAACGATGGTTTTCCATCGTTGATATGCGACGTTTGCGTTTATAAAGCGAGCATCGCTCATGAATTTCGACAACAATGCCAACAATCGGACGCTCGTCTCAGGCTTATTTACGATAAGCCAACTCGTTCGAATATTACCGATTGTTGTACGCAGACCAAGCCACAAACTCGTATAATACTTACGAGAAAGTTATCGACTCCACCGACGTCGTACTACGTCAAGCAGGAGCTACAATCGTCCAATTCGCAGGATTACGCAACCGCCATCGAGGCTTACACGGAGGGTCGGGTCGAAGCTGCGAGAGACGAGCATCCAATCGATTGTCAGGACGAGAAGCTATTTCTCTGCAACATCGGTTTCGACGGTACGAAAGACATGGCGGAGAAGGAAGCGACGATACTCGCGGTCGAATCGCATCAGGACGAATGTCCGATCGAATCGTCCGAACTGACGACGACTCTCGTGACCGTCAACGCGAATGGACAATTGGAGACGCAACGTTTGATCGTTAAGAACGACGATGTAAAATGCACGGAAGTTGAATTGGGAGAAGAATATTTGAACGAACAATTATTGAACGACGGTGTTGTCGAGGAACGTGCCAATGTGGAAAACGATGATTTCGAGGAACAACAGCAAGAGGAGCTTATTCGCGAGACGCAGCAAGAACCGGAGCATGACGAGACGGTACCGAAGAAACGAACGTCGTCGAGAAAACTCAAGTCAAAAGGTTACAGCGACGAGGAGATTGTCGAGGATGATTATTTCAATTCGCTCGGAGTAAACGATATTCCGAGCAACGACAAGCCCAAATACAAATGTAACGTTTGTTCGAAACGTTACATGACGCAAAAGGGCTTGAAAAATCACGCACAGGTCCACGAGAAGAATCACAAATGTCCGATTTGTAACAAGCCATTTTTCAAACTAAAACACATGGAGAATCATCGAAAGATTCATAGCGCAAAACCACACGCGTGCCAATTGTGTCACGCGAGTTTCTCAAAATCGCCGAGTCTCGAGCGTCATTTGAAATCACACGCTGATAAATGCGACGATACGACGAGTAAACTTCACGAAATGGACGTTGTAAGGAAAGAAACTGAAACGAAAAAGGACGAGCCTAAAAGCGAGCTCGAGTCGGAGGACGAGACGAGCCTTACGAACGATAACGATGAATTTGACAATACTCCAGAGCTTTACAAGTGCGAAGATTATTCGCAATTTGATTCGTCCATGAAAAATCTCAAACGACACAATCTCGTCCACGGTGAGAAAAAATATTCCTGCACAGTTTGTAAAAAATGGTTCTTCAGGCCCGATACGTTGAAGAAACATGCCGAGAAACACGGACACGGCTTACTCGACAATCTCGTCGATGAGAACAAATTGTTCGAATCCGACGACGATGGATTCTCCAACTCTACGAACGCGCGTGCCTCCGGTAACGAGGTAgtaaaaacgcgagacgagagcgaCGAGGATGGAATTGGAGAATACAAGTGTCAGCATTGCGAGAAAATAATGTCGACGAAAAATGGCCTGAGAAGGCACGTTTCCATGCACAAACCAAAAGCCGAACCGGCAACGTGCGAGATATGTAAAAAAGTCTGCGCTAGTCAGGCCAGACTAGGACTTCATCTCAAGACTCACAATAAACCAAAGGAGAAAGTACAGCGTGAGTATCTTTGTCACATCTGTAGCAAAGTATATCCTAGCAATTCGTCGTTGACTTATCATATGAGAACTCACACCGGTGTTAAACCGCATGTTTGTAAAATTTGCAACAGCGGCTTTACTACAACGACCAGTCTCGCTAATCATATAAGAATTCATACCGGTGACAAACCTTTCGTTTGTCACGTGTGTAGCGCCGCGTTTGCCGTTAGTTCGGCTTTCAGACGACATCTCACTCGTCATACCGGCGAGGCTAATTATCTTTGTAAGACTTGTGGCAAAGCGTTCAAGAGACTGAGTACATTGAAAGAACATACTTATACGCATTCGGGTGAAAAACCATACGTTTGTAAAACATGCGGCGCTGCTTACAGTCACAGCGGAAGTTTGTTCGCTCATCAGAAACGCTGTCGCGTACAGTATGGTGAAATGATCGAGGAACATCACGTTGCTCATCATATACACGTTAATAATGTTCAAACGGCGGTTCGTTCACTCGCGGTTATAGGTCAGATGTATTAG
Protein Sequence: MAMNTNYFDPPINIDRVCRICLLESTNLTSIFCTEQDVDDFSGLSHKIQVCGSIEIHENDGFPSLICDVCVYKASIAHEFRQQCQQSDARLRLIYDKPTRSNITDCCTQTKPQTRIILTRKLSTPPTSYYVKQELQSSNSQDYATAIEAYTEGRVEAARDEHPIDCQDEKLFLCNIGFDGTKDMAEKEATILAVESHQDECPIESSELTTTLVTVNANGQLETQRLIVKNDDVKCTEVELGEEYLNEQLLNDGVVEERANVENDDFEEQQQEELIRETQQEPEHDETVPKKRTSSRKLKSKGYSDEEIVEDDYFNSLGVNDIPSNDKPKYKCNVCSKRYMTQKGLKNHAQVHEKNHKCPICNKPFFKLKHMENHRKIHSAKPHACQLCHASFSKSPSLERHLKSHADKCDDTTSKLHEMDVVRKETETKKDEPKSELESEDETSLTNDNDEFDNTPELYKCEDYSQFDSSMKNLKRHNLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLFESDDDGFSNSTNARASGNEVVKTRDESDEDGIGEYKCQHCEKIMSTKNGLRRHVSMHKPKAEPATCEICKKVCASQARLGLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEEHHVAHHIHVNNVQTAVRSLAVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056275;
90% Identity: iTF_01057829;
80% Identity: -