Nmel013963.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023256.1:30541504-30544689[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.022 15.8 1.2 1 23 331 353 331 353 0.98 2 11 0.00022 0.025 15.6 4.6 1 23 357 379 357 379 0.98 3 11 0.00024 0.028 15.5 3.0 1 23 384 406 384 406 0.96 4 11 0.0021 0.25 12.5 2.9 1 23 460 482 460 482 0.98 5 11 7e-05 0.0081 17.2 3.1 1 23 559 581 559 581 0.98 6 11 0.00033 0.038 15.0 0.7 2 23 589 610 588 610 0.97 7 11 1.1e-06 0.00012 22.9 2.1 1 23 621 643 621 643 0.96 8 11 6.7e-05 0.0078 17.2 1.0 1 23 649 671 649 671 0.98 9 11 0.00017 0.02 15.9 0.7 1 23 677 699 677 699 0.98 10 11 5.1e-06 0.0006 20.7 2.0 1 23 705 727 705 727 0.96 11 11 9.2e-05 0.011 16.8 0.3 1 22 733 754 733 754 0.96
Sequence Information
- Coding Sequence
- ATGGCCATGAACACAAGCTACTTTGACCCACCACTTAATATAGACAGAATATGCAGAATTTGTCTACTAGAGAGTACCAATTTGACGTCAATATTCTGTACCGAACAAGACGTCGACGACTTTTCGGGTCTGTCTCATAAAATTCAAGTGTGTGGATCGATAGAAGTACACGAGAACGATGGGTTTCCATCGTTGATATGTGATGTTTGCGTTTATAAAGCGAGCATAGCTCATGAATTTCGACAGCAATGCCAACAATCGGATGCTCGTCTCAGGCTTATTTACGATAAGCCCACCCGTTCAAATATTACCGATTGTTGTACGCAGACCAAGCCACAAACTCGTATAATACTTACGAGAAAGTTATCAACTCCACCGACGTCGTACTACGTCAAGCAGGAGCTACAATCGTCCAATTCGCAGGATTACGCAACCGCTATCGAGGCTTACACGGAGAGTCAGGTCGAAGCTGTGAGGGACGAGCATCCTATTGATTGTCAGGACGAGAAGCTATTTCTGTGCAACATCGGCTTCGACGGTACGAAAGACATGGCCGAGAAGGAAGCGACGATACTTGCGGTTGAGCCACATCAAGATGAGTGTCCAATCGAATCATCGGAACTGACGACGACCCTCGTGACCGTCAACGCGAACGGCCAATTGGAGACACAACAGTTGATCGTCAAGAACGACGATGGAAAGTGCAACGAAGTGGAGTTGGGGGAAGAATATCTGAATGAACAATTATTGAACGACGGTGTTGTCGGCGAACATACGAACGTGGAGAACGATGAGGATTTCGAGGAACAACAGCAAGAAGCGCTTCTTCGTGAGGCGCAGCAAGAACAAGAGCATGAAGAGACAGCACAGAAGAAACGAACGTCGTCGCGAAAGCTTAAGTCAAAGGCTTATAACGACGAGGAGATTGGTGACGACGATTATTTCAATTCGCTTGGAGCAAGCGACATTCAGAGCAACGAAAAGCCCAAGTACAAATGTAACGTTTGTTTAAAACGTTACATGACGCAAAAAGGTTTGAAAAATCACGTTCAGGTACACGAGAAGAACCACAAGTGTCCGGTATGTCACAAGCCATTTTTTAAACTAAAAAACATGGAGAATCATCAAAAGATTCACAGCGCAAAACCACATGCGTGCCAATTGTGTCACGCGAGTTTCTCGAAATCACCGAGTCTCGAGCGTCACTTGAAATCACACGGTGATAAATGCGACGATACGACGAGCAAAGCTCATGAAATGGATGGTATAACGAAGGAAATTGGAGCGGAGAAGAGCGAGCCTAAAAGCGAGATCGAGTCGGAGGACGATACGAACGTTACGAACGACATTGACGAATTTGAGAGTGCTCCAGGTATTTATAAGTGCGAAGTTTGTTCGCAACTTTGTTCGTCCATGAAAAATCTTAAACGGCACACTCTGGTCCACGGTGACAAAAAATGTTCCTCCACAGTTTGCAAAAAATGGTTCTTCAGGCCTGAtacgttgaagaaaaatgcCGAGAAAAACGGAAACGGATTGCTCGACAATCTTGCCGATGACAACAAATTGTTCGAATCTGACGACGATGGGTTCACGAACTCGACCAGCGCACGTGCGTCGAGCAACGAGGTAGCAAAAACGCGAGATGAAAGCGACGAGGATGGGATTGGAGAGTACAAGTGTCAGCATTGCGACAAAGTAATGTCGACGAAAAAAGGCCTGAGAAGGCATGTATCAATGCATAAACCAAAAGCCGAACCGGTGACGTGCGAGATATGCAAAAAGGTGTGCGCGAGTCAGGCACGACTGGCGCTTCACCTCAAGACCCACAACAAATCAAAGGAGAAAGTACAGCGTGAATATCTTTGTCACATATGTAGCAAAGTGTATCCTAGCAATTCGTCGTTGACTTATCATATGAGAACTCACACTGGTGTAAAACCGCATGTTTGTAAAATTTGCAACAGCGGCTTTACGACAACGACGAGTCTCGCTAATCATATAAGAATTCACACTGGTGACAAACCCTTCGTTTGTCACGTTTGTAGCGCCGCTTTTGCCGTTAGCTCGGCTTTCAGACGACATTTGACTCGTCATACCGGTGAGGCTAATTATCTTTGCAAGACTTGTGGAAAAGCATTCAAGAGACTGAGCACATTGAAAGAACACACTTATACACATTCGGGTGAAAAACCATACGTGTGCAAAACATGTGGTGCTGCTTACAGTCACAGCGGAAGTCTGTTTGCTCATCAGAAACGCTGTCGTGTACAGTACGGTGAAATGAACGAGGAACATCACGTAGCGCACCATATACATGTTAATAATGTTCAAACGGCGGTTCGTTCACTGGCGGTTATAGGTCAGATGTACTAG
- Protein Sequence
- MAMNTSYFDPPLNIDRICRICLLESTNLTSIFCTEQDVDDFSGLSHKIQVCGSIEVHENDGFPSLICDVCVYKASIAHEFRQQCQQSDARLRLIYDKPTRSNITDCCTQTKPQTRIILTRKLSTPPTSYYVKQELQSSNSQDYATAIEAYTESQVEAVRDEHPIDCQDEKLFLCNIGFDGTKDMAEKEATILAVEPHQDECPIESSELTTTLVTVNANGQLETQQLIVKNDDGKCNEVELGEEYLNEQLLNDGVVGEHTNVENDEDFEEQQQEALLREAQQEQEHEETAQKKRTSSRKLKSKAYNDEEIGDDDYFNSLGASDIQSNEKPKYKCNVCLKRYMTQKGLKNHVQVHEKNHKCPVCHKPFFKLKNMENHQKIHSAKPHACQLCHASFSKSPSLERHLKSHGDKCDDTTSKAHEMDGITKEIGAEKSEPKSEIESEDDTNVTNDIDEFESAPGIYKCEVCSQLCSSMKNLKRHTLVHGDKKCSSTVCKKWFFRPDTLKKNAEKNGNGLLDNLADDNKLFESDDDGFTNSTSARASSNEVAKTRDESDEDGIGEYKCQHCDKVMSTKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLALHLKTHNKSKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMNEEHHVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057829; iTF_01057108;
- 90% Identity
- iTF_01057829;
- 80% Identity
- -