Basic Information

Insect: Netelia thomsonii
Gene Symbol: -
Assembly: GCA_964017225.1
Location: OZ024922.1:4842566-4844714[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 2.3 9.0 0.6 2 23 141 162 140 162 0.97

2 14 4.6e-05 0.0035 17.8 2.4 2 23 176 197 175 197 0.98

3 14 6.3e-05 0.0048 17.4 2.0 2 23 204 225 203 225 0.97

4 14 1.2e-05 0.00089 19.7 1.4 2 23 297 318 296 318 0.97

5 14 9.9e-07 7.5e-05 23.1 0.5 1 23 351 373 351 373 0.97

6 14 1e-06 7.9e-05 23.0 1.8 1 23 379 401 379 401 0.96

7 14 3.9e-05 0.003 18.0 0.6 1 23 407 429 407 429 0.98

8 14 4e-05 0.003 18.0 5.3 1 23 435 457 435 457 0.97

9 14 1e-07 7.7e-06 26.2 1.0 1 23 462 484 462 484 0.97

10 14 0.00028 0.021 15.4 0.2 1 23 490 512 490 512 0.97

11 14 1.2e-07 9.3e-06 25.9 3.9 1 23 518 540 518 540 0.96

12 14 5.2e-06 0.00039 20.8 1.6 1 23 546 568 546 568 0.98

13 14 2.1e-05 0.0016 18.9 1.1 1 23 574 596 574 596 0.94

14 14 0.00045 0.034 14.7 1.8 1 23 603 626 603 626 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	2.3	9.0	0.6	2	23	141	162	140	162	0.97
2	14	4.6e-05	0.0035	17.8	2.4	2	23	176	197	175	197	0.98
3	14	6.3e-05	0.0048	17.4	2.0	2	23	204	225	203	225	0.97
4	14	1.2e-05	0.00089	19.7	1.4	2	23	297	318	296	318	0.97
5	14	9.9e-07	7.5e-05	23.1	0.5	1	23	351	373	351	373	0.97
6	14	1e-06	7.9e-05	23.0	1.8	1	23	379	401	379	401	0.96
7	14	3.9e-05	0.003	18.0	0.6	1	23	407	429	407	429	0.98
8	14	4e-05	0.003	18.0	5.3	1	23	435	457	435	457	0.97
9	14	1e-07	7.7e-06	26.2	1.0	1	23	462	484	462	484	0.97
10	14	0.00028	0.021	15.4	0.2	1	23	490	512	490	512	0.97
11	14	1.2e-07	9.3e-06	25.9	3.9	1	23	518	540	518	540	0.96
12	14	5.2e-06	0.00039	20.8	1.6	1	23	546	568	546	568	0.98
13	14	2.1e-05	0.0016	18.9	1.1	1	23	574	596	574	596	0.94
14	14	0.00045	0.034	14.7	1.8	1	23	603	626	603	626	0.92

Sequence Information

Coding Sequence: ATGGATGCACTAGCTATATGCAGTCAGGTTATGGATGAGAACATTGTCACGGTCGTGCTTAAGGAAGAACCCGGCGAGAGATACGCTCAGTCTTACATCGAGGATATCTGCACGGGAACGTTTGGAAAGGTTTTCCTACCGATCGACAGTCATGAAGGGGATTTCACGGATGAAATGGTCAAACTGGAACTAGAGAGTCAATCGAGCGGACATCATTGCTGGGCTGCTCAATTAGCAACGACGACATTGTGCTCGGGTTCGCAGACCGACGAATCGAGCCAAAAATCCGCCGATCGCGAAGATCCGGAGGAACAGGAAgccgacgaggaggaagaacgcGTCCTCGAGGAGGAACATTGCGACAACGCGGAACAAGAAAAAGACGAGGATTCTCCCGATCAGCCAAAATTCTACAAGGTCCAGTGTACCATTTGCAAAAAGTGGTTTCTTAACAACGACTCGATGATAACGCATCTTCGTAGTCACTGCGGCAACGGCGGTGGTAACGTCACCGCCGGTGGCGATCAGTGTCAAGTATGTCACCAGACTTTCCAAGATAACGCGAGTCTTCACGCTCATATGTTGACCCACGTCGGCATGAATCCGGTCGAGTGTAACGTCTGCCAGAAGAGATTCGCTTACAAATGGTGTCTGAGAAATCACGTCCAAACCCACGCAACGACCAGTAACGATTGTTGTCCAACCGGAAGTGGCGTCGTGGTAGTCGCGAATCCCGAGCAACCAGGCGCGACGTTAGGCGTCGGTTACAATTTCGACAACGCGAACACCGAGGCAACGAGAAAAATGTACGAACGTACGAATATCGTCGAGGACAGACGAAAAGATCCGATGAACAAAGTCGAGAATAACGATTCTCGAGGTGGTTTACGTTGCGATATTTGTAAAATGCGTTTCAAAGATCGCGACACGCTCAATCGACACACCCTCATGCACATGAGCGAAACTCCTTACAAATACGACGTATTCTCGGCGACTTTTCGCGACAAACCGGATTCAGATATGCGCGCGAACGTTCAAACAACGAAACAATTTAAATGCACACTGTGCGACAGATCTTTCGCTCAGCGAACCGCTCTTAATAATCACATGTTGGCGCACAGCGGTGAAAAACCTCACGCTTGCAATATATGCGAAAAAACGTACAAACGAAAGTCCGAGCTCATCAGACACACGATGGTACACACTGGCGAGCGACCTTACGAGTGCAAAGAGTGCCTCATGACCTTTCGCGAGAAAGCGAAGCTCAATTCTCACATGCTCGTACATACCGGTGAAAAACCTCACGAATGTTACATTTGTCACAAGGCTTGCGCTCGTAAATCGGATCTAAACAGTCACATGCTATCGCACACGGGTGGCCAATACGATTGCAAAGTTTGCGACAAAATATTCACCCGTAAATCGGATCTCAACAGGCACACTCTAATTCACACCGGTGAAAAACCATTCGCTTGCGAATTGTGCGACATGGCGTTTCGCGAAAGAACCAGGCTAAATTCGCACATGCTCGTTCATACGGGCGACAAGAGACACGCTTGTCACATATGCGGCAAAACGTTTCGTGAAAAATCCAGTCTGAAGAAACATATGCTCGTACATACGGGCGATCGTCCTTACGAGTGTTTCGTTTGCAAGAAAACTTTTACCCAAAAAACAACTTTGAACAGTCACGTACTCGTTCATACGGGTGAACGTCCTTACGAGTGCGAAACGTGTCCGAAGGCGTTTAGGGAACGCTCGTCATTgagaaaacattctttatttcATACTAGTAACGATAGGGCTCACGAGTGCAACGTTTGTTTCAAAAAATTTACTCACAAATCTGCCCTTGGCTCGCACGCGGCTATCGATCATCCCTCATAg
Protein Sequence: MDALAICSQVMDENIVTVVLKEEPGERYAQSYIEDICTGTFGKVFLPIDSHEGDFTDEMVKLELESQSSGHHCWAAQLATTTLCSGSQTDESSQKSADREDPEEQEADEEEERVLEEEHCDNAEQEKDEDSPDQPKFYKVQCTICKKWFLNNDSMITHLRSHCGNGGGNVTAGGDQCQVCHQTFQDNASLHAHMLTHVGMNPVECNVCQKRFAYKWCLRNHVQTHATTSNDCCPTGSGVVVVANPEQPGATLGVGYNFDNANTEATRKMYERTNIVEDRRKDPMNKVENNDSRGGLRCDICKMRFKDRDTLNRHTLMHMSETPYKYDVFSATFRDKPDSDMRANVQTTKQFKCTLCDRSFAQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFRERTRLNSHMLVHTGDKRHACHICGKTFREKSSLKKHMLVHTGDRPYECFVCKKTFTQKTTLNSHVLVHTGERPYECETCPKAFRERSSLRKHSLFHTSNDRAHECNVCFKKFTHKSALGSHAAIDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056244;
90% Identity: iTF_01056244;
80% Identity: -