Ntho009822.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- lola
- Assembly
- GCA_964017225.1
- Location
- OZ024922.1:32427278-32429179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-16 4.9e-13 48.7 0.1 1 45 359 403 359 403 0.97
Sequence Information
- Coding Sequence
- ATGGGTACCTCCCCCGATCAGCACTATTGCCTACGCTGGAACAATCATCAAGCGAATTTCGTCGAGGTTTTCGATCAACTGTTGGAGAACGAGACTTTTACGGACGTAACTTTGGCCGTAGACGACGGCGTATTCGTGAAATGTCACAAAATGGTGCTGGCCGCGTGCTCGATGTACTTCAAGACACTGTTCACGGAATTGCCATGTACCCATCCGATAGTCGTCCTCAAAGACGTCAAGTACAAAGAGATCAAGGCAATATTGGAATACATGTACACGGGACAGGTTAACGTCGCCCAGGACCAATTGACGGCTTTGCTCAAGGTCGCGGAGGTGCTCAAGGTCAAGGGCCTCGTCGCCAACGAAACATCCTCGACGTCTTCGTCGACGGAAGCGACGAATCGCCACGAGGAGGCCATCAGTACAAGCACGACCGGGCCGATACAGCCGCATTTCGAGGCTGTCGGTGCCGCTGGTAACTCATCACCGCCGCATTCGACGAGTTCGCCGTATTACGGTTACGGAAAATCTCCGACCGGTCGCAATCACGGACCGAAACTCCCGTTGCCAATGTGGGCATTGTCACAGACGATTCCACTGGGTGGACAAGGAACGAACGTCGATTCGGCGGGGATGCAGTCATCCCTTACGGCAAGACACTCGTCGTTGTTCGCGTCACATTACGAAAACGCGACCGAAGCGTCGACGACCCACGGACGTAAGAACAAAATTACGGGCAGCGGCATGATGAGAAATCACGACACACCGATATTACGTACCGTATTGGGTCAGGGTCACGTAGACAGTTCGATACCTCATCATCAGCCAGACGGCCACGAGACGCAATATCGAAGTCACAGCAACGGCTCGGCCAACAACGAGAGCGACGGTAGACGCAGTAGTATGGACACACCGAGTTGTCCACCCGCTCATAGCCCGTACGCGACCGACACCTCGATGATGGAGGACGACGATAAGAAAGGATCGCCACAGTCCTTCGCGGATGATTCGAAAGCAGGTATCGCCAATTACGTTCCGGCTCAGAAACCCGAGTGGAAGCGTTACAAGCAGTACACGAGGGACGACATAGCGAATGCAATCGAGGCCGTTAGACGGGGTATGAGCGCACTTCAGGCCGCCCGAAAGTTCGGCGTACCCTCGAGAACGCTCTACGACAAAGTGAAGAAACTCGGGATCACGACTTCGAGGCCCTTCAGACGCAGTGCAAACGGTAGCGGCGCTTGTTTCCCGTATGGCGTCGGGGGAAACGTTAACGGAAGTATTTACGGAACGGTCTcggagagcgagaacgagaacaGCAACGTCCTCATGGAGAATCCTGCCTCGTTACTCGAAACTGCATTTGGTGAAAGTCGGGACAGCTCGAGGGATCGCGAGGCGATGATGGAAATCGCACGGACGAGTCCGAGCCCTCAACCGTTGCCTCTGTACTCTCAAAGGCCGATGTCCGCCGACGAACAAGCCCACCAGGAACAACCACCGATCGAGGACAACGAGGAGAACGAGGTCGAGGATCTTTCGGTGAGCCGTAGATCCGACGTACGTGTTATAATGCCACCGAGCATCGCGATTAAAGAAGAGATTTAG
- Protein Sequence
- MGTSPDQHYCLRWNNHQANFVEVFDQLLENETFTDVTLAVDDGVFVKCHKMVLAACSMYFKTLFTELPCTHPIVVLKDVKYKEIKAILEYMYTGQVNVAQDQLTALLKVAEVLKVKGLVANETSSTSSSTEATNRHEEAISTSTTGPIQPHFEAVGAAGNSSPPHSTSSPYYGYGKSPTGRNHGPKLPLPMWALSQTIPLGGQGTNVDSAGMQSSLTARHSSLFASHYENATEASTTHGRKNKITGSGMMRNHDTPILRTVLGQGHVDSSIPHHQPDGHETQYRSHSNGSANNESDGRRSSMDTPSCPPAHSPYATDTSMMEDDDKKGSPQSFADDSKAGIANYVPAQKPEWKRYKQYTRDDIANAIEAVRRGMSALQAARKFGVPSRTLYDKVKKLGITTSRPFRRSANGSGACFPYGVGGNVNGSIYGTVSESENENSNVLMENPASLLETAFGESRDSSRDREAMMEIARTSPSPQPLPLYSQRPMSADEQAHQEQPPIEDNEENEVEDLSVSRRSDVRVIMPPSIAIKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057002; iTF_01057557; iTF_01057756; iTF_01056160; iTF_01055891;
- 90% Identity
- iTF_01057002; iTF_01057557; iTF_01057756; iTF_01056160; iTF_01055891;
- 80% Identity
- iTF_01057002;