Nmel001966.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- lola
- Assembly
- GCA_964007305.1
- Location
- OZ023254.1:11732515-11734429[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-16 7e-13 48.7 0.1 1 45 360 404 360 404 0.97
Sequence Information
- Coding Sequence
- ATGGGTACCTCCCCCGATCAGCACTATTGTCTACGTTGGAACAATCATCAAGCGAATTTCGTCGAGGTTTTCGATCAACTGTTGGAGAACGAGACCTTCACGGACGTAACGTTAGCTGTGGACGACGGCGTATTCGTGAAATGTCACAAAATGGTGCTGGCCGCGTGCTCGACGTACTTCAAGACACTGTTTACGGAATTACCATGTACTCATCCTATAGTCGTTCTCAAGGACGTCAAGTACAAAGAGATCAAGGCCATATTGGAATACATGTATACGGGTCAGGTAAACGTCGCCCAGGACCAATTGACGGCTTTGCTCAAGGTCGCGGAGGTGCTCAAGGTCAAGGGCCTAGTCGCGAACGAAACATCCTCGACGTCCTCGTCGACGGAAGCGACGAATCGCCACGAGGAGGCCATAAGTACCAGCACGACCGGGCCGATGCAGCCGCATTTCGAAGCTGTCGGTGCCGCCGGTAATTCGTCACCGCCGCATTCGACGAGTTCGCCGTATTACGGCTACGGAAAATCTCCGACCGGTCGCAATCACGGACCGAAACTTCCATTGCCGATGTGGGCCTTGTCACAGACGATGCCGCTCGGTGGACAAGGCACGAACGTCGATTCGGCAGCGATGCAATCCTCCCTTACGGCGAGACACTCGTCGATGTTTGCCTCGCATTACGAAAACGTGGCCGAAGCGTCGACGACTCACGGTCGTAAGAACAAAATTACGGGCAGTACGGGCATGATGAGAAATCACGATACACCGATATTGCGTACCGTATTGGGCCAGGGTCACGTTGACAGTTCGATACCTCATCATCAACCGGATGGCCACGAGACGCAATATCGAAGTCACAGCAATGGCTCGGCGAACAACGAGAGTGACGGTAGACGCAGCAGTATGGACACACCGAGCTGTCCACCCGCTCATAGCCCGTACGCGACCGACACCTCCATGATGGAAGACGACGATAAGAAAGGATCGCCGCAGTCTTTCGCGGATGACTCGAAAGCAGGTATCGCCAATTACGTTCCGGCTCAGAAACCCGAGTGGAAGCGTTACAAGCAGTACACGAGGGACGACATAGCGAATGCAATCGAGGCCGTTAGACGGGGTATGAGCGCACTTCAAGCTGCCCGAAAGTTCGGCGTACCCTCGAGAACGCTCTACGACAAAGTGAAGAAACTCGGGATCACGACTTCGAGACCCTTCAGACGCAGCGCAAATGGTAGCGGCGCTTGTTTCCCGTACGGCGTCGGGGGAAACGTTAACGGAAGTATTTACGGAACGGTCTCggagagcgagaacgagaacaGTAACGTCCTCATGGAAAATCCTGCCTCGTTACTCGAAACGGCATTTGGTGAAAGCCGGGACAGCTCGAGGGATCGCGAGGCGATGATGGAAATCGCACGAACGAGTCCGAGCCCTCAACCGTTGCCTCTGTATTCTCAGAGGCCGATGTCCGCCGATGAACAAGTCCACCAGGAACAACCACCGATCGAGGACAACGAGGAAAACGAGGTCGAGGATCTTTCGGTGAGCCGTAGATCCGACGTACGTGTTATAATGCCACCGAGCATCGCGATTAAAGAAGAGATTTAg
- Protein Sequence
- MGTSPDQHYCLRWNNHQANFVEVFDQLLENETFTDVTLAVDDGVFVKCHKMVLAACSTYFKTLFTELPCTHPIVVLKDVKYKEIKAILEYMYTGQVNVAQDQLTALLKVAEVLKVKGLVANETSSTSSSTEATNRHEEAISTSTTGPMQPHFEAVGAAGNSSPPHSTSSPYYGYGKSPTGRNHGPKLPLPMWALSQTMPLGGQGTNVDSAAMQSSLTARHSSMFASHYENVAEASTTHGRKNKITGSTGMMRNHDTPILRTVLGQGHVDSSIPHHQPDGHETQYRSHSNGSANNESDGRRSSMDTPSCPPAHSPYATDTSMMEDDDKKGSPQSFADDSKAGIANYVPAQKPEWKRYKQYTRDDIANAIEAVRRGMSALQAARKFGVPSRTLYDKVKKLGITTSRPFRRSANGSGACFPYGVGGNVNGSIYGTVSESENENSNVLMENPASLLETAFGESRDSSRDREAMMEIARTSPSPQPLPLYSQRPMSADEQVHQEQPPIEDNEENEVEDLSVSRRSDVRVIMPPSIAIKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01056714;
- 90% Identity
- iTF_01056714;
- 80% Identity
- iTF_01056160;