Basic Information

Gene Symbol
nfxl1
Assembly
GCA_964007305.1
Location
OZ023257.1:33331376-33334150[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.1 1.5e+04 -3.3 1.1 15 19 126 130 125 130 0.81
2 17 0.17 2.4e+03 -0.7 0.7 4 10 161 167 160 167 0.93
3 17 8e-08 0.0011 19.5 14.8 1 19 175 192 175 192 0.99
4 17 5.7e-06 0.079 13.6 14.1 1 19 229 246 229 246 0.94
5 17 2 2.8e+04 -4.8 15.0 1 19 281 300 271 308 0.87
6 17 3.5e-05 0.49 11.1 8.2 1 18 336 353 336 354 0.97
7 17 0.0047 65 4.3 6.4 1 12 388 399 388 399 0.94
8 17 0.48 6.6e+03 -2.1 1.0 6 10 409 413 408 413 0.92
9 17 1.2e-07 0.0017 18.9 15.3 1 19 419 437 419 437 0.94
10 17 0.8 1.1e+04 -2.8 0.6 5 10 465 470 465 470 0.90
11 17 0.00014 2 9.1 8.5 9 19 485 495 483 495 0.90
12 17 0.00019 2.7 8.7 6.4 1 12 505 515 505 515 0.95
13 17 0.87 1.2e+04 -3.0 5.8 14 18 554 558 554 559 0.89
14 17 0.0004 5.5 7.7 7.5 1 12 595 606 585 606 0.92
15 17 0.58 8e+03 -2.4 1.4 6 10 627 631 626 631 0.88
16 17 2.7e-05 0.37 11.4 11.0 4 19 641 656 639 656 0.91
17 17 1.1e-05 0.16 12.7 10.7 1 16 701 715 701 721 0.89

Sequence Information

Coding Sequence
ATGCGAAAATTCAAGCGGGCTCAGGCCCAGAATCAGGCATCAATACAGAAGCATTTGGAGCAGGCGAATTCTTTGGATTCCTCTAGCGACGATGATAATGAGGATAATGGAGAGGCGTTGCAGCAGGCTGTAACCAAAGTTCTATCTTCTTATCAAGTTGAGGGTGGAGATacagaaaaatcgatatcgtacCTAACAGATACTTTTCAATCAGGCGCGGCTACGTGTCTCATTTGCATCTCATCCGTTAAGAAGACCGATCCGATATGGAGTTGTGCGACGTGTTTCTCATTCATGCATCTCCCGTGTATACAGCACTGGATAAGGGACAGTCTAAGCtataagaaagagaaaggaattaCTCTTCTTTGGGCATGTCCAAAATGTCGCACGGAATATCCCGAAGACAAAGTACCAAAGAAGTATCTTTGTTTCTGTGGTCAAACAACGGATCCACCATATCAACCATGGACTATAGCTCATTCCTGCGGAGAAAAATGCGACAAGGAGCTTCAGCCATTCTGTGGCCATCGTTGCGTCCTACTCTGTCATCCAGGTGCCTGTCCTCCCTGTCCGAAGATGATAACGGTAAAATGTTTCTGTGGGAAAGCATCGCCTCAAGCCCGTCGTTGCAACGCTAAGGATTGGAGCTGTGGAAAATTATGCTCGCGGAGTCTTCCGAATTGTTCTCATCGCTGCCGCGAAGAATGTCATACCGGCGTTTGTCCACCTTGCTCGGAGCGTCTTACGGTTGCCTGCAACTGCGGTGACCGAACGGAGGAGCGTTTCTGCAACGAGGCGAATTGGTACTGTGATAAAATCTGCGGTAAACGTTTATCCTGCAACGTTCATATCTGCGAGGGTACTTGTCATCGTCCGACTGACTGTGGCGACTGTCCAAGTGCTAAAAATCGCACCTGCCCTTGCGGCAAAAAGCGCTACAACGTTTCGTGCAAACAGGCGCAAGTTCCGACATGTGGCGATACCTGTGGCAAACCGCTAGACTGCGGCTTGCACTATTGCAATATGAGGTGCCATACAGACCGTTGTGGACAATGTCTGGAGGTCGTTACGAAGATGTGTCGTTGTCGATCGTACGAGAAAGAAATGGCATGCGCAAAGGAATTTCACTGTAACAAGAAATGTCCTCAAATGCGTTTATGCGGCATGCActtatgtaataaaaaatgttgcgATTGCCTGTTGCGCAATACTTTCAACGCTTGCGAAAAAGTATGTGACAATACACTCAATTGTCAGAAGCATAAGTGCTCAGCACCGTGTCACAGCGGACCTTGCTATCCTTGCCCGCGTACGAACGTTATACAGTGCCGTTGCGGCAATTCCAAGATAACCGTACCATGTGGTCGTATAAAACGTCTCAAGCCACCTAATTGTAACAAATTGTGCAAAATCCCACCAGTTTGTCATCATCCGAAGCGTGAATCACACAAATGCCATTACGGACCTTGCCCGCCTTGTAAGAAGATATGCGCTTTGATACACAAGAAATGTGGTCATACTTGTCCCGCGATTTGCCACACGAAAGTTTGGGTCAAGCGGGCTATCTCGAATGGTGCAAAAGGAACAGGACCCGAAGCGAGCAGTGGGGCTTTCTTTGAACCACCGAAGGAGAATAGAATGCAACTTAAGACACTGCCGTGTCCACCTTGCGAGGTCTCGGTCATGGTTACGTGCCTTGGTGGACATGAGACATTACCATGGCCCTGTCACAGCGCTGTGGCAAAATCTTGCTTGAAACCCTGCGGTCAGTTGCTCAGTTGCACCAATCACACATGCGAGATGGTTTGTCATGATGTATTTAACGAAGCTGGAGAGAACAGCGAGCAAACTGGAAGTAATGCCAATTGCAACGAATGCGAGAGACCTTGCGCTCTTAAAAGACCACCGGGATGTGCTCATGCGTGTCCAAGATTGTGCCACGAAGCACCTTGCTATCCTTGCAAGCATCTGGTCAAAGTTTCATGCCACTGTGGCATTAATTCGTTGTATAAAAGATGCGCCCAACTTACCTCAGCGACCGAGGACTCGCGGATCGAATTGCTCAAGTGCGGCAATCAGTGTCCCAAGAATTACCCGTGTGGCCATCGCtgtattgaaaattgtcatcCGGGTAAATGCTTGAATCCAGAAGCTTGCAGTAAACGAGTCAAAGTGTGGTGCAAGTGCAAGAGGATCAAGAAAGACTTTTCGTGCGTGAAAGTTCGTGAAGGTACTGCCAATGTTGATTGTGATGAAACATGCAGAAAAATCAAGGAGGAACAGGAGAGAGCCCGCGAGATGGAAGCAGCGAGAAAGCGTCGAGAGGAAGAAGCAAGGAATCGCATGGAGATTGAGgaattcgagagaaaattcaaGCCACGAAGGAAAGGACGAGGAAAGATGCAATCTAACGACGATTACAACCGCGATAGATCGCCAATGTGGAAGAAAGCTCTTATATTTGGAACGGTCTTCGTTGCGATAGTGTGTGCAATATTTTACACGAATCATGGACAGATCAActtatttaattaa
Protein Sequence
MRKFKRAQAQNQASIQKHLEQANSLDSSSDDDNEDNGEALQQAVTKVLSSYQVEGGDTEKSISYLTDTFQSGAATCLICISSVKKTDPIWSCATCFSFMHLPCIQHWIRDSLSYKKEKGITLLWACPKCRTEYPEDKVPKKYLCFCGQTTDPPYQPWTIAHSCGEKCDKELQPFCGHRCVLLCHPGACPPCPKMITVKCFCGKASPQARRCNAKDWSCGKLCSRSLPNCSHRCREECHTGVCPPCSERLTVACNCGDRTEERFCNEANWYCDKICGKRLSCNVHICEGTCHRPTDCGDCPSAKNRTCPCGKKRYNVSCKQAQVPTCGDTCGKPLDCGLHYCNMRCHTDRCGQCLEVVTKMCRCRSYEKEMACAKEFHCNKKCPQMRLCGMHLCNKKCCDCLLRNTFNACEKVCDNTLNCQKHKCSAPCHSGPCYPCPRTNVIQCRCGNSKITVPCGRIKRLKPPNCNKLCKIPPVCHHPKRESHKCHYGPCPPCKKICALIHKKCGHTCPAICHTKVWVKRAISNGAKGTGPEASSGAFFEPPKENRMQLKTLPCPPCEVSVMVTCLGGHETLPWPCHSAVAKSCLKPCGQLLSCTNHTCEMVCHDVFNEAGENSEQTGSNANCNECERPCALKRPPGCAHACPRLCHEAPCYPCKHLVKVSCHCGINSLYKRCAQLTSATEDSRIELLKCGNQCPKNYPCGHRCIENCHPGKCLNPEACSKRVKVWCKCKRIKKDFSCVKVREGTANVDCDETCRKIKEEQERAREMEAARKRREEEARNRMEIEEFERKFKPRRKGRGKMQSNDDYNRDRSPMWKKALIFGTVFVAIVCAIFYTNHGQINLFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01058050; iTF_01057319;
90% Identity
iTF_01058050; iTF_01057319;
80% Identity
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