Nmel005541.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023254.1:40334637-40339435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.94 1.1e+02 4.2 4.8 2 23 227 249 226 249 0.97 2 20 0.13 15 6.9 2.1 1 23 310 332 310 332 0.97 3 20 0.0025 0.29 12.3 1.3 1 23 381 403 381 403 0.98 4 20 0.029 3.4 8.9 5.6 1 20 470 489 470 494 0.91 5 20 0.48 56 5.1 0.8 1 23 503 526 503 526 0.82 6 20 0.0026 0.3 12.2 3.1 2 21 532 551 531 552 0.95 7 20 0.39 45 5.4 0.0 3 23 592 613 591 613 0.89 8 20 2.2e-05 0.0025 18.7 0.5 1 23 619 641 619 641 0.97 9 20 1.6e-07 1.8e-05 25.5 0.2 2 23 684 706 683 706 0.96 10 20 0.17 20 6.5 0.2 1 23 712 735 712 735 0.94 11 20 0.002 0.24 12.6 0.1 1 23 742 765 742 765 0.94 12 20 0.00083 0.097 13.8 0.5 3 23 775 795 773 795 0.92 13 20 0.0029 0.34 12.1 0.1 2 20 851 869 850 869 0.95 14 20 0.016 1.9 9.7 0.0 1 23 888 910 888 910 0.98 15 20 0.00024 0.027 15.5 1.6 2 23 930 951 929 951 0.97 16 20 0.00039 0.045 14.8 0.5 1 23 970 993 970 993 0.94 17 20 0.094 11 7.3 0.3 3 23 1037 1058 1035 1058 0.95 18 20 8.9e-05 0.01 16.8 0.6 2 23 1084 1106 1083 1106 0.96 19 20 0.092 11 7.3 0.3 1 23 1115 1139 1115 1139 0.96 20 20 0.0025 0.3 12.2 0.2 2 23 1197 1219 1197 1219 0.96
Sequence Information
- Coding Sequence
- ATGAATGCCGTGGACATACAAAATGTGCACAACGTCTGTAGGTTGTGTCTTTCCATGGAGGAACCAAAAGCATCAGTTTTCGCCGACCAAACATCCTCAGTTTCGTTAGTCATGAAAATACAAAGTTGCTTGTCAATCGAGATTCTTACAAGCGACAGAGTGTCGACAATGATATGCGTCGAATGTATGCGGAGGGTGAATAAATGGTACGTTTACAAGGAGTATTGTCTACGTTCCCAACAAAAACTGCAAGACTGTCTTGGAGATCAATTAGAAAATCTAGGAAACATCAAGGTAGAACCCATGGATGTTTACGAGCCTCCAAGTCCACTGGAGACTGTACCACTGACTACGGATGACGAGTTGGAAAGTTTGCCGGGCAGACGCATCGAGGCAATTCCGATGATGTCTCCAGCCATAAACCATAATATGACGATGATCACTGCGATAAAGCGTGAAGTCATTGATGAAAATGGTACCCTTGATGAGATGAACTCTTTTACAAGCCCCGAATTGTTGATAAATCCAATGGCCCTTACCGGGCACAAAGAGGACAGACTGATGGAAGCGGATTCGACACAGAAGTTCATAAATGTCAAGAAAACCATTAAGAACAGTAAGAAGAAACTTCGTCGCGGGcctcatacacattttcgAGGTGTCCGACAATTTAAACAGCGCTGCCCACACTGTCAGATATATTTGCACTCCAAGTATTCTTATGGAAATCATATGAAACGTTTTCATAGTGGCAAAATATATGAGAAAACGCATAAACGTGCTTTGAACGCGGAGGAAGATATGACAAAAGTGCACAGTGACGAGAATACTGAAGAGGTCGAGGACGTTGAGGATGAACTTGCGAATCTAGAAAAGGATTCACCTTTGACGCCCGTTCAGCAGAATATCATAAGTCAGCTTAAAACATTCTCCTGCTACTCCTGCCGACAATCGTTTGGCGATCGCCGCAGCACCCTCAATCACATAAGACAACACATGCCTGATCTTCGTCCCTACACTTGCATCGCCTGTCTCACCGAATTCGCCGATCGTTCGATCTACAAACTTCACTGCGGTGCTTCGTTCCAGTGCGCTATGAAGATAGCCCTTGTGATTCCTGAACATGGaactgaaaaatatttcacctgTAACATGTGCCTCAGATCGCTTTCCAACAGGAGGGAACTCTTGAGCCACTTGTCAAGACACTCGGACAAACAGTACGAGCAGCTTTTAGCTCATCCCTTCAATGCCCCACCAAAGCTTAAGCCAATGACTGCATTCAGCTTGTCaccgaaaaaaagtttgaaaccCAAGCCCAAAATGGCTGAAATGGCAAATCATACTTCTGTCTTTCACAAAAAGGGTATTCCAAACCCTTACAAATCTGGAGATCCGGCGTACAATCATAAATGCAACTACTGTGGCATGATCTACAGATATAAGCAAAATATGTTTAAGCACGTCACCTTGTGCAAACATTTGCCACCCGAAGTTCGAGTCTGTTATCAGTGCGTGATCTGCGGATTGACATTCCTCGCTTTCAGCAAATTTCAGAGTCATTTCAGTAGCGAGCATAAGAAACGTGACATCGAGTGTTCCCACTGCCGCACGAAATTCAAACAGTCATCGGACTTTTTGCACCACTATCGAGACGAATGCACGGTCAGGTTAGCACGGGTGCGTCAGAATTTGGAGGTACGCGATGAACAAGGTGACTGGGAGATTGAGACTACGGATTCCAGCCGACCAATTGAGACCGGAAAGTTCGGCTGCGCCCTTTGTCCGGAGACCGTTTTCGATACAAGAGTCAAGCTGGTTGATCACATGAAGATTCATTCCAATCCGTCTGTATTTTCGTGCACGATATGCAATTGCACTTTCGGCAATGCATCGACTCTTGAGGCTCACATGGCTGAACACGAGGTTGGCATTCCTCCGCCGGCTCTTGAAGACAATATGTGCGTCCCTATGCTGGAAGACGAGAGAACCTATGATACTAATACGAGTCGTTTCTCTGTACAGTCTGATCTTGCCACGAACAATACGGAGTGCAACGAGTGTGGCAAAGTATTCGCAAATTACCCGAACCTTCGTCGTCACATACGCAGCGTGCACGACGCTATTGGCCGTTTTAATTGTTTCACGTGCGCACTGACTTTCGTTACGGAGGAACAGTGGCAGGATCATGTTGATAAAGAACACGAAAGTACAAGTACGATGCACGCTTGTCCTTTGTGCCCCGAGGTTTTCGAGACCGAGCTGTCGCTCAACGATCACCGTCGCGACGTTCATGGCTTGAACGGCGAGGCTCATTTGGCATGTTACATATGcggtaaaatatttatcaacgaAACTTCTCTCAAGATTCATCGAGGTCATCATTTCCGCGTTAATTCCCGGCTGAGCATCGGGAACCTTCAAAAACCATCAGTAGAAACAGATGGCGCGAATGACGACGGGGAGATAATTATTGAGACAAGAAAATCACCTACAGCGAGAAAATCCTTTCCAAACGGAAGTCCTCAGGCGCGACTGATGAATTTTCTGCAGTGTCAGGTATGCGATGAACGTTTCAATGACGTAGTAGATCTTCGTAAACATCTGTGGGACGTTCATTGCGCTCGCACCAAGCCCGAGCGAAGTTACGCGTCGCACAAATTTCAGTGCGAGCTATGCACCAACGTGCTCCCCGACGAGGAGGCTCTCGCGAGTCACATGAAATGGCACGAGAGTAACCCGATATTGAGCCACGTGGAGAAGACCGATAACGTCGACGAGCAAACCCAGTGCGATCTTTGCGGCAAATATTACAGTAGTTTGGCGAGTATGCGAAAACACAAGCGACGCCACAAACTCGGCACTCTCGGAAAGTTTCACGGTcagacgaggaagaagaatacCGGACATGTGTGCACAATTTGTCGCAAGGTTTTCGCAGGAAAGACGACATTGGCGAAGCACAAAGAAGTCGCGCATACGGTACGTACGTCCACTTCCATCGAGGACCGCGATATCATCAGACCGGTAAGACCCAGGCTGGATTTTGACGCCATTGTCAAGAATCATGGAGTTCTCGCTAagaacgatgagaaaaaatcaataaactGCAATCTATGTAGAAGAGTCGTGCCGAATATGAGAGCACTCTACAAACATCGACAACGAGTACACAAAATTGTCATAGAGGACGATGCAACGGCTCTCCGAGACGATTATTATGATTCGGCTAATAATGGCGATCGCGTCGTTTGCACAATTTGCGACAAGAATTTCTCGAGCATCGGAAACATGAGAAAACACTTTAAGAGAGTTCACAGTAACACTCGTGTTTCGTCGCAGTTTAAGTGTTCGATCGAGGGCTGCGGACTTCAATTCAAAAATCGTATTGCCAAAGACAATCACGAAAACACTCATTCCAATCTTATGTACACGTGCGCGCTGTGTCCAAGATTCATGCTCAGCCGTGCTTCGATGGACGATCATATGCTTAGTGCACATAGGACTAACTATGCGCGAGAAAATAATGCGATCTTGTGCAAGAAAATTGATCTGGATAGTTATGTCGTTAAAGGAGCCAATGGCAGGCAATGCCCATTGTGCAAAATCAACTATCCGAATAACAAAGCTCTCAAGGTACATTACCTCAAGGTGCACGAGGGCGGGGCTTGA
- Protein Sequence
- MNAVDIQNVHNVCRLCLSMEEPKASVFADQTSSVSLVMKIQSCLSIEILTSDRVSTMICVECMRRVNKWYVYKEYCLRSQQKLQDCLGDQLENLGNIKVEPMDVYEPPSPLETVPLTTDDELESLPGRRIEAIPMMSPAINHNMTMITAIKREVIDENGTLDEMNSFTSPELLINPMALTGHKEDRLMEADSTQKFINVKKTIKNSKKKLRRGPHTHFRGVRQFKQRCPHCQIYLHSKYSYGNHMKRFHSGKIYEKTHKRALNAEEDMTKVHSDENTEEVEDVEDELANLEKDSPLTPVQQNIISQLKTFSCYSCRQSFGDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVIPEHGTEKYFTCNMCLRSLSNRRELLSHLSRHSDKQYEQLLAHPFNAPPKLKPMTAFSLSPKKSLKPKPKMAEMANHTSVFHKKGIPNPYKSGDPAYNHKCNYCGMIYRYKQNMFKHVTLCKHLPPEVRVCYQCVICGLTFLAFSKFQSHFSSEHKKRDIECSHCRTKFKQSSDFLHHYRDECTVRLARVRQNLEVRDEQGDWEIETTDSSRPIETGKFGCALCPETVFDTRVKLVDHMKIHSNPSVFSCTICNCTFGNASTLEAHMAEHEVGIPPPALEDNMCVPMLEDERTYDTNTSRFSVQSDLATNNTECNECGKVFANYPNLRRHIRSVHDAIGRFNCFTCALTFVTEEQWQDHVDKEHESTSTMHACPLCPEVFETELSLNDHRRDVHGLNGEAHLACYICGKIFINETSLKIHRGHHFRVNSRLSIGNLQKPSVETDGANDDGEIIIETRKSPTARKSFPNGSPQARLMNFLQCQVCDERFNDVVDLRKHLWDVHCARTKPERSYASHKFQCELCTNVLPDEEALASHMKWHESNPILSHVEKTDNVDEQTQCDLCGKYYSSLASMRKHKRRHKLGTLGKFHGQTRKKNTGHVCTICRKVFAGKTTLAKHKEVAHTVRTSTSIEDRDIIRPVRPRLDFDAIVKNHGVLAKNDEKKSINCNLCRRVVPNMRALYKHRQRVHKIVIEDDATALRDDYYDSANNGDRVVCTICDKNFSSIGNMRKHFKRVHSNTRVSSQFKCSIEGCGLQFKNRIAKDNHENTHSNLMYTCALCPRFMLSRASMDDHMLSAHRTNYARENNAILCKKIDLDSYVVKGANGRQCPLCKINYPNNKALKVHYLKVHEGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057100;
- 90% Identity
- iTF_01057842;
- 80% Identity
- -