Nmel006782.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- MBD-R2
- Assembly
- GCA_964007305.1
- Location
- OZ023255.1:8534732-8544431[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 8.3e+03 -2.9 0.0 46 73 416 443 414 480 0.61 2 2 5.9e-16 2.7e-12 46.7 0.2 6 74 522 591 517 594 0.86
Sequence Information
- Coding Sequence
- ATGGGAATGGCGCGCAAATGTTGCGTGAAGAATTGCGACAGCGACGGTCAGGAAGCACGTTTCAAGGGACTCCCGTTGCACAAATTTCCAAAAGACGCTCAATTGAGAAGCAAGTGGCTCGTCAGTGGCTCTTTCGAACCAAATTTTAAACCAACGCTCGGCCAATTCGTTTGTCACAGACACTTCAAAAGAGCCGACTACGAACCAATGAAGGGACCCAAATTTGTTCTACGAAAGGGCACTGTACCCACAATTTTCACCGACTATGACAATCATCCGGATCCATTAACGATGCCCGTGAAGACAAGCAGCTCGTATCCTCAGGAAGACCTGGATTTGATCAATTCCGAGATACTAAATATGGATACCTCAGTTCTCGGTGAATTGTCCCTCTTCCCTGAGGCGAGAACTCCCAAGTCAGACAGCTGCGGCGAGGCTTGCAATTCAAGGCCTGGTTCATCGGCGGATTCGCTGAATCCTTCTGAGATGACGGATGCAACTGATGCGGGTTTCAAGTCTGCGGGTGAAAACGACGATATAACCAGAGCCTCTGAACTCTTAGGGGAGAAGATGGATTACAAGCTCGAGGTGAACGGTGATGAGAGTAAGACCTCGAACACGCAGGAAAGCTTTAAGATGAAGAAGGAAGGTACCGAGGGAATCGAGGCAAGCGATGAAAAAGTTAACAATGAAGCGGATAAGCCTAGAACCAAACCAATCACACGTGGATCGTTGAAGTTTTATCCAGGCGCAAGATTGGAAGCCAAAGATTTCAATGACAAATGGTATTCGGCACGAGTGGTCGAAACCGACTGGGCGGAGAGAGAAGTGTTGATACATTTTGACAAGTGGAGCTCGAGATTCGACGAGTGGATACCCATGGATAGTTCGAGACTGAGAGAACTGCAAATGCTACAACCAAGTGAACAAGTTTGGGTGCTTCCAACTGCGGACACGAAGATGAGAGATTTCGTTGTTGGTGAGAGAATTTTGGCTACGTGGGCAGACGGAAGAAAATATCCAGCCAAAGTGAATGCCGTGTTGGGAAACGATAGATACGACGTACTTTTCGACGACGGATACGCAAAAATTGTAAGGTCatcaaaaatgacaaaaatcgCATCGACCACAGAGAAGAAAGCCATGGAAACAGATTCATACATCGGCAGCAAGCAAGAGAGAAGGGATAAGAAACGCAAGCATACAGTGATGGAGCTCTTTCAAACGCATCCTCGAAAGCGCAACAAACCAGAGGTTGAGAAGGTTGTTAAGAAAGAAGAGATATCAACGACCGAAGAGGTGAATAATTATAGCCTGGACAGCAGTACCGATTTCGATAGTTCTGTGCGAGGAACGTATTACGACTCTGGTTCTGAATTGTTGAGAGGTTTTGAGAACGCAAAACCCAAAATGAAGAGTTTTACGAAGAAGATCAAGAGGGATTTGCCTAAGAACGATACAGATCAGGAAGATGATCTCGGGCCCGAGTGGATCGACGGAGAGCCTCAAGGTGTAGAGGCCTTCATCGTGGAAGGAAACGAAGGAACCCGACGATCAATTATAGTCGCGGACAAAAGATTGCCTTCCATGTGGCAAAAACATTTCACCCAACGGAGGGCCGGTACGTCTGCGGGAAAGTGGGATGTTCTTTTCGTCCATAAGCCAAGTGGCAAAAAGTTTCGCTCGCGAAGCGACATTCGAACGTTCGTTGAGAGTCAGGGCTTTGAATTTGATTCGGACATGTTTGATTTCTGCATtcaccgaaaaaaaaacaaaggaccGGTAGCCAAAGTTAAAGTTGAGACACCCACCGAACCGCCAAAGAAGATTAAGACTCTGTTaccaaaaacaaaagcaaCACCAGTTGCACCGATAAGTTCGATGTTGGTTGCATCTACTCCTACTGAAGCTACGACGCCACTCGCTTCAACGACCGCACCCATCGAGGAAGGTGCAGTTTTCATTGGTGGTCTCCGTGTCGAGATGGAGGACAGTGCTTACAAGTGTCCGAAGGACGGATGTAATAAGAATTTTCGCAAAGAGAATCTGCTGCAAATGCACATAAAGCATTATCATCCGGAATACTCGAAATTTTTGGGCTCGACGCCGAACGTTGCCGATTTGGCTTACGCGAGAACTATCGGCGAGTCCGTGATCGACGTGACGCcgaaaaaatcatcgaataatTTCTTGGAGAAGATCAACAAGTTCGAGAAACGAAAAGCTGCCCAGGAGAAGCCAGTTGTACCGGTGACGCAGTTTCTACCATCTCCAGTACCAAGCGTACCTTTGCTCGCGACTTCACCGTTGCCAGCTGTGAATTCCAGTACCGAAACCATTATGCCAGAAAGGCCTTCAGGACCTCCGATTCGCGAGAATGAACCCCGATTAGAGCTTATGTCGCCTGTATCAAACGTCAGCATGGATGTCGACGAGGACTTTGTAAAAAAAGCCGACGCTAGTTGTGCCATGTCACCGGGTGCATTGTTCGATCTCAAAATTCGCGAGGAAAAAACACAAGTGGGTATAAAGACGCTTTTACCTGTGAGACCATCCGTTCCAACGATCGACGCCTCCAGACTCGACAGATCCAAGTCATTGGACGAAGTTGCCAATGCAGACAAGGGAAAGAATCAGAGAAAACGCCAACTTTCTGAGTACAGTTCTGACATTCCCCGACCCAAAGGACGACAagGCATGCAGGAGCTTACGGATGATTATGGGGATTTAGATGACAGTGCATTGGATGCCGAGGGTCCAGCTGCTCTCGTTTATAGATTCAGTCGTAGGAAATCAGACGCAAAGAGCGACGAGAACAGCCAAAGCAGTCAGCTAAACGATTCGCGCCTCGAAAAATCCGATATCCCGAAAGGGGATGCTGCTAAAAGAGATATTAGTAACGAGGCGGAAGAAGGCGATGGTGTTATGATGATGATCAATGGCGAAATGGTGAAGGTCGAGCAGTTGCGCCGAgaggaaattataaattgcacCTGCGGTTTTATGGAGGAGGATGGCTTGATGATTCAATGCGATCTTTGTCTCTGCTGGCAGCATGGTCATTGCAACGccatcgagaaagagaaagacgtgccggaaaaatatatttgttatatttgtCGACATCCTTATCGACAACGTCCATCGTTGAAGCATATGCATGATCAGGAATGGCTCAAAGATGGAAAATTGCCGAGCTTGACCAATCGTACCAAAGACCAATCCGCTATTAATCGACGAACCTCGATGTTGAAACGATCGTATGATCTTGTCGCGGCACTGCTACAGATTCAGCAAATACTTCACAGTCTTCGAGTCAAGATCAGCGTGGCACAAAAAAAGGATCACCCTAAATTGTATCTTTGGGCGAAGAATTGGGAAAAATCTGAGATTCCTGAACCAACGATCGAGCCTGTGGCTGTGATGCAAACGGTGAAGCCCAAGGTCGAAATTGTTGAGCCTGGAATGGATACTTTTGTCGAGCCGAAAGTGGAAGTTCCGACTGTAGTGAAGAAAGACCCTGATGAAAAATCAATCGCTTCTGATACggaattgatgaaaattcTTGAAGAGGATAGCACACACTCGGATGAAACAAAAGTTGGATGCAAAAAAGAGGATACGAAAGATTCTGGTGGCGAActtgatattttattgaacACACTTGCCGAGAACGAGAATTCTACTGATGTTCAAGATAATTCGTCTGCCATGgataatacgaaaaataatactGAATTACAAAACGATGTATCAACGATCAATACATCATCCGTAAATCTGGATAATCCTGAAAAAATAACACCGGCTGAAGCCATATCGTCTATTCAAACACAAGAACCCCCTGTACCTGTGCAACCTTTCATACCGGAGCCCGAAGCTCCGATTGATCCCGCCGAGTGTCGACACCGACTCTTGGAGCATATCGAACATTTTCAGAATCACATAGATTCGCGATTGACTACAATCGAGGCACATGTTTGTGCATTGGAAACTATGGATCTTGACTCGAACGCAACGTCTACGGATGTGCAGCGTCGAACGAAGCAAACGATTCAGATGTTACTTCGAGATTTGGGGACCGTTCGAAAACTGGCCGCTCTGTGCTGA
- Protein Sequence
- MGMARKCCVKNCDSDGQEARFKGLPLHKFPKDAQLRSKWLVSGSFEPNFKPTLGQFVCHRHFKRADYEPMKGPKFVLRKGTVPTIFTDYDNHPDPLTMPVKTSSSYPQEDLDLINSEILNMDTSVLGELSLFPEARTPKSDSCGEACNSRPGSSADSLNPSEMTDATDAGFKSAGENDDITRASELLGEKMDYKLEVNGDESKTSNTQESFKMKKEGTEGIEASDEKVNNEADKPRTKPITRGSLKFYPGARLEAKDFNDKWYSARVVETDWAEREVLIHFDKWSSRFDEWIPMDSSRLRELQMLQPSEQVWVLPTADTKMRDFVVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYAKIVRSSKMTKIASTTEKKAMETDSYIGSKQERRDKKRKHTVMELFQTHPRKRNKPEVEKVVKKEEISTTEEVNNYSLDSSTDFDSSVRGTYYDSGSELLRGFENAKPKMKSFTKKIKRDLPKNDTDQEDDLGPEWIDGEPQGVEAFIVEGNEGTRRSIIVADKRLPSMWQKHFTQRRAGTSAGKWDVLFVHKPSGKKFRSRSDIRTFVESQGFEFDSDMFDFCIHRKKNKGPVAKVKVETPTEPPKKIKTLLPKTKATPVAPISSMLVASTPTEATTPLASTTAPIEEGAVFIGGLRVEMEDSAYKCPKDGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVIDVTPKKSSNNFLEKINKFEKRKAAQEKPVVPVTQFLPSPVPSVPLLATSPLPAVNSSTETIMPERPSGPPIRENEPRLELMSPVSNVSMDVDEDFVKKADASCAMSPGALFDLKIREEKTQVGIKTLLPVRPSVPTIDASRLDRSKSLDEVANADKGKNQRKRQLSEYSSDIPRPKGRQGMQELTDDYGDLDDSALDAEGPAALVYRFSRRKSDAKSDENSQSSQLNDSRLEKSDIPKGDAAKRDISNEAEEGDGVMMMINGEMVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYICYICRHPYRQRPSLKHMHDQEWLKDGKLPSLTNRTKDQSAINRRTSMLKRSYDLVAALLQIQQILHSLRVKISVAQKKDHPKLYLWAKNWEKSEIPEPTIEPVAVMQTVKPKVEIVEPGMDTFVEPKVEVPTVVKKDPDEKSIASDTELMKILEEDSTHSDETKVGCKKEDTKDSGGELDILLNTLAENENSTDVQDNSSAMDNTKNNTELQNDVSTINTSSVNLDNPEKITPAEAISSIQTQEPPVPVQPFIPEPEAPIDPAECRHRLLEHIEHFQNHIDSRLTTIEAHVCALETMDLDSNATSTDVQRRTKQTIQMLLRDLGTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629154;
- 90% Identity
- iTF_01056050; iTF_01057645; iTF_01057697; iTF_01056815; iTF_01056875;
- 80% Identity
- iTF_01056050;