Nmel014397.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- klhl36_1
- Assembly
- GCA_964007305.1
- Location
- OZ023256.1:37048837-37050911[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-07 8.9e-05 22.7 0.0 2 38 203 239 202 245 0.88 2 4 7.8e-11 6e-08 32.9 0.0 5 39 256 289 253 296 0.85 3 4 0.003 2.3 8.6 0.0 7 34 310 336 306 342 0.85 4 4 4.8e-11 3.7e-08 33.5 0.1 5 38 368 401 367 405 0.95
Sequence Information
- Coding Sequence
- ATGTCTGCAACAATAGGGATAAACAGTCAACCTCATATCGAGGAGAGTTGCTGCTTCAAATGGACGGATTATCAGAATCATCTGTCGGACGTCGTTCGACAGCTTCTCGAGGAAGAATGCATGGTCGACGTAACCCTTGTTGCAGAAAGAGAACGTATACAAGCACATCGAATCGTGTTGTGCTCTTGCAGTACTTTGTTTCAAgAAATATTGAGCCAGACAAACGATGAACATTCGACAATAATACTGAGCGATATATCGGCACAGGACGTTCGTTCTATAGTAGAATTTTGCTATCATGGAGAAGTTAGAATTCCGGTTGAAAATATTAGCAATCTATTGGAGGCTGCTCACTCACTTAAAATTTGTGGTCTTATGGAgaTCGATGGGTTGGACGAGAACGATGCAATTATCAGTACAAAAGATATTGGCGAAGACGGCATGGATCCTCTTGCTGAATTCGAAGAATCTGGCGACAATACGACTGAATCTCTAGAAGAACAACTATCGTACAAAGATGTGAGGAGTAGTTGCGAAGGGATGGATAAGGTTTCATCgggtaaaaagagaaaacgtcGAAAGGAAGCCCCAAAACGAGAGTACAACGAAGAGATGCTTGTATCTGCTATAAATGATGTCAGGTCGGGCTGTACTCTTGTGGAGGCAGCCACAAGGAATAATATACCACGTTCGACGCTGTATATGAGAGCCAAAGCTCTTGGAATACAATTGAATGCTTCTAGAAACGAATACCCAGCCGAATGCATGAAAGCTGCCATAGATGCCGTTATCGCTGGTTTGAGTTTACAGCACGCTtctgagaaattttttataccTAAAACAGTACTTTGGCGACGTATACAGAAAGAAGGGTATCAGATATTACGTACAGAAGTCAAACGACCCTATGGTGCtgaaaagagagaggcagCAGTCAAAGCTCTTCAAAGAGGCGAAAATCTTACAAAAGTGGCACAAGAATTTCAGaTACCAAAAACAACGTTATTTCGCGACAAAGCAAGATTAGTGGACGAGGGCAAGTTACCAGAATCTTTttggaaaaaacgaaaaactggAGATGAAGCtgttaaaaaattacgtcTCGAAGAAGCAGTTGCAGCATGTAAAGGTGGAAGAATGTCTCAAGCTGCTGCATCTATGGCATACAGTATACCTAAAACTACGATATGGCGAAGACTACAAGCCGATGGAAGAAATTCCGAGCGCACCGCAGCCTTGAAAGATACGGAAGAGGAAATGTGCGGCGACGACGATAAGAACGAGCAAAATCCTGCTGAATTTGCACTTTGCGAGGTACCATCGGAAATTCCTATAACATATATAGACCAAAATCTACCGACAGATTCTGTGATAATATTGACAACCGAAGATGTAGAGGGTCTCAATATAGGGGAGGGCAGACAGATAATCGTCAATCAAGAATGCGGAGAAGAATACGTTCCTTGCTCTCTCAGCTTATCTGACAACACTATGAGCTCAGACTATCAGACGGCAGAGAGTTAA
- Protein Sequence
- MSATIGINSQPHIEESCCFKWTDYQNHLSDVVRQLLEEECMVDVTLVAERERIQAHRIVLCSCSTLFQEILSQTNDEHSTIILSDISAQDVRSIVEFCYHGEVRIPVENISNLLEAAHSLKICGLMEIDGLDENDAIISTKDIGEDGMDPLAEFEESGDNTTESLEEQLSYKDVRSSCEGMDKVSSGKKRKRRKEAPKREYNEEMLVSAINDVRSGCTLVEAATRNNIPRSTLYMRAKALGIQLNASRNEYPAECMKAAIDAVIAGLSLQHASEKFFIPKTVLWRRIQKEGYQILRTEVKRPYGAEKREAAVKALQRGENLTKVAQEFQIPKTTLFRDKARLVDEGKLPESFWKKRKTGDEAVKKLRLEEAVAACKGGRMSQAAASMAYSIPKTTIWRRLQADGRNSERTAALKDTEEEMCGDDDKNEQNPAEFALCEVPSEIPITYIDQNLPTDSVIILTTEDVEGLNIGEGRQIIVNQECGEEYVPCSLSLSDNTMSSDYQTAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01056711;
- 90% Identity
- iTF_01056711;
- 80% Identity
- iTF_01056177;