Basic Information

Insect: Neria commutata
Gene Symbol: MBD-R2_1
Assembly: GCA_963457695.1
Location: OY735245.1:65440502-65444459[+]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-22 7.4e-19 67.6 0.1 4 76 416 486 413 487 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-22	7.4e-19	67.6	0.1	4	76	416	486	413	487	0.93

Sequence Information

Coding Sequence: ATGGGACGCCGTTGCTGCGTAACTGGTTGCAACTCCACATCGCGTTTGCCGGAGCACCACGGCGTCACATACCACTCCTTCCCACTCGATGTCAACATACGCGCTATTTGGTCACGCAATACGCGTCTCAGTTCGGTGCGTCAGATAACGAAGAGTGTGTTGGTATGCTCGCGTCACTTTCGACGCGCTGACTTTCAGCCGCAGCGCAGCGGCAAATACTTGCTGAAGCAGCGCGTATTCCCAACTGTATTTCCCTGGGGCAAGGTGGATCCCACACAAGTAGAGGCTGACCTAGAGCAGCTAAAGGCCTCGGGTGCGGTCACAGCACAATCCTCGCCCACGTCGGCCACCGAAACAGCGCCCACAGAGGATGTTACCAAGGCAACTGTGGAGGCGACTGTGGCGCAAATTATGGCGCAAACGGCAGAGCTAAAAGCGTCTACAAGTGCTGCTGTCGAGGGAGAGGCGGGCGCGGATCCAGCAGGGGTAGCGACACCGCCTGCTGGTGTGAAATTTGAACCAGTGACCTCATTTACGCCCGGCGCACGCTTAGAGGCACAAGACTTCGACGGTGTCTGGCATGTTGCGCGTGTAGTCGAAGTGGACAATGACGATCGCGAAGTGCTCATCAAATTTGAGCGCAGTGGAAAAACCAAATCTGCGGTGGTGGGCACAGAGGAATGGATACCCATGAATTCCACGCGTTTGCGCCAAAAAATCTCTACAAAACCTGTGCCCATTTTTGAGCTGGAAGAGAAATGCATGGCGCGCTGGTCTGGACCGCGTAAGTTTCCGGGCACCGTAAAGAAAGTGCTGGGCAACGACACCTACGAGGTGCTGTTCGACGATGGCTACGTGAAGAACGTGCGCGCCATACACATGAATAAAATACAAGTGCCTGCAGAGCCTGAAGCGCCCGCACCTCCAGCAGTTTCCACAAACCTAGCATCTGCTGTGACTGCTGCGCCTACGGTTGAGACGTCAAACACATCTTTGGGGGCTTCGACGCCCGCTAAGGAAATGAAACGTGAATCCCCTATTTTGGCAGGTGCTTCTGCTGCAAAGAAACGTGCGCCACCGGGTCCACGCAAAGATTGGCCACTACTCGATATGTCCAAATTGAACATGGATTCACTCGAGTTGCCCGAAATACCACACGACGGCGAATGGACCTGCCATTGGGTTAACGATCAACCCATTGGCCAGGAGGGCTTTCTTATTGTAGGCGAACATCGCAAGCCCACAGTAGTGGTGGAAGACTGGCGCCTGCCGCCCGGCTGGATCAAGCACATGTATCAGCGTTCTAATGTGCTCGGGAAGTGGGACGTCATACTCGTAACGCCCAATGGCAAACGCTTTCGCTCAAAGGCGGATTTGAAACTATTTCTCGAGGAGCAGGGTCAGGTGTATAATCCTGACATTTACGACTTTAGCATACATCGTCGTCGCGCCAAGGACATTAATGCGTATGTATATACGCCCGATTATACACCGCAGCAAATTCCTAAACCAAAGTCCACATTGGATTCGAGTCTGGATGCCAGTGGTCCATTAGATTCGTCCGCAGCGGACTCGGCAGAAGCCGCCGCAGCGGCTGTGCTGGCTTCTAGCTTGTCCAGCAACAAAAGCTCACAATTTATTGAGACGCCAGTGGCTACAGCAGTGCCACCCATGGAGCTAATGACTACTTCGACGCCCGTTGCGAAGGCGACCGGCTCGGAGGCAGCTAACTCGGCGCCTGGCACACCCACTAATGAAGCTGACCCACCCGTTGGCGATGGTTttgCTTATATTGGTGGCTTGAAAGTGCAGATTATTGATAACCTCTTTCGTTGTCCGCAGCAGGGTTGCGCTAAAAATTTCCGCAAAGAAAATCATTTGCAGATACACATTAAGCATTATCATTCCGGTCTAATTAAACTACTCGGCGCTTGTCCTAAAATGCAGGAGCTTGCCGAAAAACGCACACACCCAATCGCCCAAGATCAAAATGAGCCACATCCAAGGAATCAAATACCAAATCAGCAATTCTTTGCCAAGCTGCACCAGCAAgatttgcagcagcaacagtcacGTGCACAACGCCGGAGCCTCGCAACAGGGACGCCGGCCATAGCTACACCGGAAATAAAAGCCGCAACAGACGAAGTTAAAAGTGAGTCTGTCGAAATGGAGAGTTTGAATGTGACTGCCTCTACAAATGAGGAAACTATGTCCACGCTTAATGCAACTGTCAATACCACCAACATGGAGCTGTCCACAGCAGACGAGTCCTCGCTGCTGGCCGATACCAGCGGCTCCGGCATACCTACAAAGCGTTCGCGCTTCTCGCCTAGCAAACGGGCGCCCGGCTCGCGCAAGAGCAACCGTCAGCGCACCACTCGCCGCTACTTGACGGCAGCGCAGGCCACCGCAGCTACAGCAGTGCCAGTTGTTGTCACAGCAGACAGCAGCTTCGGTCCGTCTGATTTCGAGGAGACGCGTCATTCTTTCAATGCCACACCCGATGCTTCGAAACTGCTGACGGATGTCAAAAGGCGAAAGTTGACTGCAGCGCCAGCCACGTCGATGAGCAGCATAGACTCGCCCGTCACTGCGGACTCGGGCTCATCTTCTTTCCAACCGCTGCAAGCGCCTTCATCCAATGAGGCGGATACCGCTAACGTCGTCGTACAACCACAGTACATCAAGGAGAATGGcgagcttataaaaatagtgCGCATGCGTCAGGAGGAGATCATCAACTGCCTCTGTTCGTATGGCGAAGAGGACGGTCTTATGATACAGTGCGAGTTGTGTCTGTGCTGGCAGCACGGCGGCTGCAACGGCATCGACAAGGAGTCTGATGTACCCGAAAAGTATGTATGCTACATCTGCAGCAATCCGCAGCGCGCACGCGAATCTCTGCGCTTCAAGCACGACCAAGATTGGGTGTACGAGGGCAAACTGCCCGTTGCCAATTATCACATACCAAATCCGAATTTGCATCAGCGTTTCGATTATCTTAAGAAATCGCACACGCTTACTGGCAATCTCATCGAGCTGAAGCAGTTCATGCATTCTCTGCGCGTGAAGATCAATATCGCGAACAATCGCTGCCATCCGAAGCTGTATTTGTGGGCCAAGAAGTGGGACGATGATGCGCCCCTAATGCCATCGACCTCGGTTGTAAAGGCCGAAGACGTCGTAAAACATGAGCTAGATGTGGAGATGAAGTTTCTGGAGTGCAAGGGCATGATTTCCGCGAACAGCTCAGCTGCTTCGTCGCCgacaaagaaaattaaatcagAGCCTTCCACACCGGCGCATCCAATGCCAAACATACCACAGCCGGAGGCACCCATAGACCCGGTGGAGTGCCAGCATCGTCTACTGGAGCATATCAAGGTGCAGCAGAATTTGCTTTCGAGTCGTTTGGGCGATATCGAAAACGAAATCGACGCACTTGAGCGGCAAGATACGCTGCCCGACCTGAAGGACGCCGACATAAGCACCACCAAAGATGTCTTGGCCACTTTCATCAAAGAGTTGGATATTATGAAGCAAATGGCCAAGCTTAATGCACTGGAACACGCCAAACTGGCGGCGAAGAATCAGCAAACTGAAATGAAGtcattttaa
Protein Sequence: MGRRCCVTGCNSTSRLPEHHGVTYHSFPLDVNIRAIWSRNTRLSSVRQITKSVLVCSRHFRRADFQPQRSGKYLLKQRVFPTVFPWGKVDPTQVEADLEQLKASGAVTAQSSPTSATETAPTEDVTKATVEATVAQIMAQTAELKASTSAAVEGEAGADPAGVATPPAGVKFEPVTSFTPGARLEAQDFDGVWHVARVVEVDNDDREVLIKFERSGKTKSAVVGTEEWIPMNSTRLRQKISTKPVPIFELEEKCMARWSGPRKFPGTVKKVLGNDTYEVLFDDGYVKNVRAIHMNKIQVPAEPEAPAPPAVSTNLASAVTAAPTVETSNTSLGASTPAKEMKRESPILAGASAAKKRAPPGPRKDWPLLDMSKLNMDSLELPEIPHDGEWTCHWVNDQPIGQEGFLIVGEHRKPTVVVEDWRLPPGWIKHMYQRSNVLGKWDVILVTPNGKRFRSKADLKLFLEEQGQVYNPDIYDFSIHRRRAKDINAYVYTPDYTPQQIPKPKSTLDSSLDASGPLDSSAADSAEAAAAAVLASSLSSNKSSQFIETPVATAVPPMELMTTSTPVAKATGSEAANSAPGTPTNEADPPVGDGFAYIGGLKVQIIDNLFRCPQQGCAKNFRKENHLQIHIKHYHSGLIKLLGACPKMQELAEKRTHPIAQDQNEPHPRNQIPNQQFFAKLHQQDLQQQQSRAQRRSLATGTPAIATPEIKAATDEVKSESVEMESLNVTASTNEETMSTLNATVNTTNMELSTADESSLLADTSGSGIPTKRSRFSPSKRAPGSRKSNRQRTTRRYLTAAQATAATAVPVVVTADSSFGPSDFEETRHSFNATPDASKLLTDVKRRKLTAAPATSMSSIDSPVTADSGSSSFQPLQAPSSNEADTANVVVQPQYIKENGELIKIVRMRQEEIINCLCSYGEEDGLMIQCELCLCWQHGGCNGIDKESDVPEKYVCYICSNPQRARESLRFKHDQDWVYEGKLPVANYHIPNPNLHQRFDYLKKSHTLTGNLIELKQFMHSLRVKINIANNRCHPKLYLWAKKWDDDAPLMPSTSVVKAEDVVKHELDVEMKFLECKGMISANSSAASSPTKKIKSEPSTPAHPMPNIPQPEAPIDPVECQHRLLEHIKVQQNLLSSRLGDIENEIDALERQDTLPDLKDADISTTKDVLATFIKELDIMKQMAKLNALEHAKLAAKNQQTEMKSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01055267;
90% Identity: iTF_01055267;
80% Identity: iTF_01055267;