Basic Information

Insect: Neria commutata
Gene Symbol: lrrfip2
Assembly: GCA_963457695.1
Location: OY735249.1:44438430-44441496[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.5 4.2e+03 -2.8 1.2 40 40 111 111 77 159 0.44

2 3 7e-115 5.8e-111 371.0 27.1 1 299 262 556 262 557 0.92

3 3 0.3 2.5e+03 -2.1 3.4 135 161 591 617 562 631 0.49

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.5	4.2e+03	-2.8	1.2	40	40	111	111	77	159	0.44
2	3	7e-115	5.8e-111	371.0	27.1	1	299	262	556	262	557	0.92
3	3	0.3	2.5e+03	-2.1	3.4	135	161	591	617	562	631	0.49

Sequence Information

Coding Sequence: atgtcagaaaCAGAAGCAGAAGCACACGTCCGGGGCATACATAATATCGGTCTTGTTGATTCTATCAATTCCACGAgtattaaaaacaacaacaacaataacaacgattgcgaaaatataaacaaatcgAAGCCGAAGTCAAATAATAATGATGAAATCATCGAGGAGTTCGACTTCAGTGATAGCAATTTAGTGGAGTTCGGTAACGCTGATTATTCCTCCGATGGTAGTGAGAGtgccgacaacaacaatagcaaaaacaaaatcgaTAGCAACGTTGAAAAGTCGCAGAAAAAGAACAATGACAATATGGCAGAAATTAGTGCAGATGTATCAGCTCTGGACAATGTACACGCAAAGAAAAGCGGCGACGCATGCTCAGCAGCGAACGTTGCAATTGCAGCGACGGCggcagcagctacaacaaatGATAACAAAAGTTCCACTACGGCTAATAAGCGCAAAAGCACACCAGCCAATTTAGGACTGCTGGCAGCAGGCATCGCCGACTCAACGGGTGCTGCAGATACGTTCTGTCCCATAACGCCGAGGCATATCGTGGACATTGAACCGGACGATTCAGCGTCATTGTTTTTGGGCAGCGCGCCTAAGGCGGATGAGGGCGGTGGGGTCAAAGGGGACACCCGTGGAACAGCAGTTGCTACTGCTAATGTTGCTGATGATCATGAGGACGATGCGGATGACTATGATGATGAGCAACGGATAACGGATAACCCCGACGATGAACTGCTAGTTCAATTTTTAGACGAAGCCAATCACATTGCTGAAGCCAGACTGGCCGCTCGTAGGCAAGCACGCGCAGAGGCGCGAGAAATACGCATGCGTGAGCTCGAGCGACAGCAAAAGGAGCAGGAACACAATGCGGATCGCGTATTTGACATGCAAACTGTATCCGGCATTGATCCCATGTCACGTTCCAGATTGGCGGCCGGCATTGGCAGTTCCCCTATTCCTGGCGTGCTGAGCACCACACGTGGAAATTCTATGTCGTCGCGCCGCAGCAGTGAAGATTCCCTAGAGGAGGAGGGACGTAGTCTGCGGGACATACGACACGAGCTTAAGGATGTCGAGGAACGGTTCCGTAAGGCGATGATCGCAAATGCACAGTTGGACAATGAGCGCGCCTCACAGACGTATCAAATCCAGCTGCTCAAAGACAAGCTGGAAGAGATGGAAGAATGTTATGCGCAGCTGCAACGTGAGTTCAAAGAGAAGTCGCGCGACTGTAACGCGCTCAAGCGGAATCTGGACAAACTAAATGAGGAGCTGAAGCTCGTGCAGGGCCAATTGAATGAACGTGATGCGCTCATCACTGAACAGGGTTTGGTTATAGTGGCGGTTGAAAATGAGGAAGGCACAGACGCCAAACGCGCTCTAGTCAGTATGGAGAATGCTCAATTGCTGGGCTCTGTACAGGGCTCTTTGGaCGTTCGACTAAAGAAATTCAGCGAGGAAAAACAACAGCTCGTGGCCGAGGtgcagcaactgcaagaacAACTGCAGAACTTCAAGAGTCAAGGCAAAGGGCGGGGAAACTCAATCAATGGCCCCTTGGGAGCCGATGAAGATTACGAAGCTCAAAGAGAGGCAAATAAAGTTATATCAGATTACAAATACAAACTGCAAAAAGCCGAACAGGAAGTCGCTAGTCTACAGGCCAGTTTAGCCCGTTCAGAAACGCAAGTCATACGATACAAAAGCACGGCGGAAGCAGCTGAGAAGGCCGAAGTGGAACTGAAAATCGAACGAAGAAAGCTGCAGAGAGAGAATCGCGAAGCCATGGAGCGTCTAGAGGAGCTTGAGACATCTAATAATCACCTGCTGAAGCGACTAGACAAGTTAAAGAATGCTAAGAGTGCCCTGCTTAAGGATCTCTGA
Protein Sequence: MSETEAEAHVRGIHNIGLVDSINSTSIKNNNNNNNDCENINKSKPKSNNNDEIIEEFDFSDSNLVEFGNADYSSDGSESADNNNSKNKIDSNVEKSQKKNNDNMAEISADVSALDNVHAKKSGDACSAANVAIAATAAAATTNDNKSSTTANKRKSTPANLGLLAAGIADSTGAADTFCPITPRHIVDIEPDDSASLFLGSAPKADEGGGVKGDTRGTAVATANVADDHEDDADDYDDEQRITDNPDDELLVQFLDEANHIAEARLAARRQARAEAREIRMRELERQQKEQEHNADRVFDMQTVSGIDPMSRSRLAAGIGSSPIPGVLSTTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEMEECYAQLQREFKEKSRDCNALKRNLDKLNEELKLVQGQLNERDALITEQGLVIVAVENEEGTDAKRALVSMENAQLLGSVQGSLDVRLKKFSEEKQQLVAEVQQLQEQLQNFKSQGKGRGNSINGPLGADEDYEAQREANKVISDYKYKLQKAEQEVASLQASLARSETQVIRYKSTAEAAEKAEVELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -