Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735247.1:17199367-17210532[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 8 1.3e+04 -3.6 0.8 7 17 136 146 135 146 0.86

2 5 6e-11 9.9e-08 32.0 0.0 1 38 560 598 560 603 0.89

3 5 1.9e-13 3.1e-10 40.1 0.0 2 39 615 652 614 655 0.94

4 5 2.2e-17 3.6e-14 52.6 0.0 1 45 669 714 669 714 0.98

5 5 1.2e-19 2e-16 59.9 0.0 1 43 721 764 721 766 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	8	1.3e+04	-3.6	0.8	7	17	136	146	135	146	0.86
2	5	6e-11	9.9e-08	32.0	0.0	1	38	560	598	560	603	0.89
3	5	1.9e-13	3.1e-10	40.1	0.0	2	39	615	652	614	655	0.94
4	5	2.2e-17	3.6e-14	52.6	0.0	1	45	669	714	669	714	0.98
5	5	1.2e-19	2e-16	59.9	0.0	1	43	721	764	721	766	0.96

Sequence Information

Coding Sequence: ATGTCTCTTCTTTCCAACTTTGCAGTACTCGTTGGTCTTCTGCGCACAGCTGAACAGTTGAAAATCAAGGGTCTCTGCGAAACAGCGGAGAATACGGACGACATAAACGACATCGCCACAGCGACAATCACCGTGTCCGAGAATATACAGCAGACGGTCGTCGGGAACATCGTTACTGCTACGGTATCGCCGGGACAGCCCTCGCCCAacacacagcaacaactgcagcaacagcaactgcaacaacagcaggttgtacagcagcagcaacaacagcaacagcagcagcagcaggttgtggtgcagcaacaacaccaacaacagcagcaacagctcgTCGCCAATGCAGCAGTACTGACGCAACACGGCCTAGCCAACGTGAATGCGGCCAACGCACAGCAACTagccgccgccgcagcagtCGCCGGTGGCCAGCTGATTGCCACCGCACCCGTGGCACAGCCTCAGCAGCAGATTGCACGCAAATCGCGCGTACGCAAGCGCTCCAAGTCGCCGGatctgcaacaacagcagcagcaacaacagcagcagcaccaccagCATCCCCAAGCGATACTAATACAGAATCAAAGCTCTGCCTCCATTGTCAGTCTGCAGCAGACGTCCTCCGGCAGTTACATACCCGTTTCGGGCGTACAAACCGTCAGCACCACAGTCGGCGGGCAGCCACAAGCCGGCATCGGAGTCGGCGAGGACTCGGATTCGGACAAACCGTCGCTGCAGAAGATCTGCAAGACCGAAGCGGCCTGCGCTTCGCCCGCATCTAACTCCTCCGCGTCGGCATCGAATAATGCCGGAGGCGTAACCACCGTTGCAGCACCGGGCACCGCCATCGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCATTCTTGGCGTCCCCATGGGCTTCCTGGACTTCGCACCTGAACCGCCGGCACCGTCGGCCACGCCTGTCACCGTAACGGAGCACGTGGACTTGTCCTGCAATCCCAGCACCGACACGCGTGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCACCTTGCCCAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATGCACCATCAAACTGGCGACGAATCAAACTCCAATTTGGTGCAACACATTAAAAGTGAAGTAATTGAGGCGaaacaacaccagcaacaacaacaacaacagcagcagcaacaacaacagcagcaacatcatcaaaCACAACAGCATCAATTGCATACACAGCAATTGGCGCAAGGAcaaacccaacaacaacaacagcagcaacaacatcagcagcaacaagcacaccaacagcagcagcaacaacagcaagctcatcaacagcaccaacaacaaacgcaTCAGGAAATTACTAGTGCAACTGTCATGGAGATTGATCCGAGCCAAATCAAACATGAACCGGGCATGATAATAACGCCCGAGATTGTGAACATGATGACCACTGGTCATATGGATATGTATAATTCCGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCACCGAACGATCAAAATGAGCCGCACTATACAAATTTGGACCAACAACATGGCGGCGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCCTCCGTCACATATGGCATCCCGTCTACCACTTTATGGCAGCGTGCTCATCGCATGGGCATCGAAACGCCAAAGAAGGAAGGCGGTACAAAATCGTGGAACGAAGATTCCTTAAATAATGCCTTGGAAGCACTACGCTCCGGACAAATATCGGCGAACAAGGCATCGAAAGCCTTTGGTATACCATCGTCGACGCTGTATAAGATAGCACGTCGCGAAGGTATTCGCCTGGCCGCACCCTTCAATGCCGCTCCGACAACATGGACACCAGAAGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTCATACGTCCGTCCAAAAAGCGAGTGCCGAATTTGGCATACCAACAGGAACCCTCTATGGTCGCTGCAAACGCGAGGGCATCGAATTGTCGCGCTCGAATCCGACGCCCTGGTCCGAGGATGCCATGAACGAAGCATTGAATTCAGTGCGCGTCGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAATCTGCCCTACAGCTCGCTCTACGGTCGCTTCAAGCGCGGCAAATACGACGTGGCCAACACCAGCGGCACTTCCATCAACAACACGTCGGGCAACACCTCGGGCAGCATTGAGATCATCGAGCATAGCCAGGAGAATTCGTTGCACATGTTTCAGCAGCAGTTCCAGTACAGTCCATCACcgcaccagcaacagcagcacccGGGCACGCCACAGCCGCAAACGCCGCAGCATCTGCAGCAGCATGTGGTGCAcattcagcagcagcaacatcaccCACAGCAACatgcacagcaacagcaacatatcCAACAGCAGGACGTCGTGGTGACATCGAGCAATCAAGTGCCGCATACGAGCAACgctgcacagcagcagcagcagcagcaacagatcCAGCAGATTTATCATCATCACAGCACACCGGAGAGAAGTTGA
Protein Sequence: MSLLSNFAVLVGLLRTAEQLKIKGLCETAENTDDINDIATATITVSENIQQTVVGNIVTATVSPGQPSPNTQQQLQQQQLQQQQVVQQQQQQQQQQQQVVVQQQHQQQQQQLVANAAVLTQHGLANVNAANAQQLAAAAAVAGGQLIATAPVAQPQQQIARKSRVRKRSKSPDLQQQQQQQQQQHHQHPQAILIQNQSSASIVSLQQTSSGSYIPVSGVQTVSTTVGGQPQAGIGVGEDSDSDKPSLQKICKTEAACASPASNSSASASNNAGGVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTMHHQTGDESNSNLVQHIKSEVIEAKQHQQQQQQQQQQQQQQQHHQTQQHQLHTQQLAQGQTQQQQQQQQHQQQQAHQQQQQQQQAHQQHQQQTHQEITSATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHGGDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQHPGTPQPQTPQHLQQHVVHIQQQQHHPQQHAQQQQHIQQQDVVVTSSNQVPHTSNAAQQQQQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: -
80% Identity: -