Ngue051392.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:133184460-133187023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0054 1.1 11.7 0.5 2 23 133 155 132 155 0.93 2 18 1.2 2.4e+02 4.3 0.5 2 20 205 223 204 225 0.91 3 18 2.3 4.5e+02 3.4 1.3 2 19 236 253 235 257 0.79 4 18 3.4 6.6e+02 2.9 0.6 3 23 266 287 265 287 0.92 5 18 0.0039 0.77 12.2 1.3 1 23 293 315 293 315 0.95 6 18 0.00078 0.15 14.4 0.2 1 19 321 339 321 341 0.96 7 18 1.2e-05 0.0023 20.1 0.3 1 23 349 371 349 371 0.98 8 18 0.069 13 8.2 0.1 1 23 380 403 380 403 0.97 9 18 0.0093 1.8 11.0 6.0 1 23 424 446 424 446 0.97 10 18 0.0069 1.3 11.4 0.7 1 23 453 475 453 475 0.97 11 18 0.00011 0.022 17.0 3.8 3 23 493 515 491 515 0.92 12 18 0.0022 0.44 12.9 3.0 2 23 521 543 520 543 0.97 13 18 4.9 9.6e+02 2.4 0.9 1 23 549 575 549 575 0.94 14 18 0.00012 0.024 16.9 0.2 3 23 607 628 605 628 0.96 15 18 2.7e-05 0.0053 18.9 1.3 1 23 634 656 634 656 0.99 16 18 0.0011 0.22 13.9 6.5 1 23 662 684 662 684 0.98 17 18 0.00062 0.12 14.7 0.5 1 23 690 714 690 714 0.97 18 18 0.00012 0.023 16.9 4.7 1 23 720 745 720 745 0.97
Sequence Information
- Coding Sequence
- ATGAATATTTCGgttgaaaatgtaaaataTGAAACTAAATCCGACATCCAaaagttgattttaaattgtattggtAAAGATGTGACGTTTACTGGTGAATTCCAACAATTAATTTGTGCGCCTTGtctacagcaattaaaacaaattgaagaatttaaacaCAAATGTGGCGAAAATAGAGATAATGGTATTGTTAAACACAACACCGCTGCTTTAACATCTGATAATTTACTGTCTACTGGTATCATAATCACATTAGATGCATGTGAAGATTATGAAGTCCTTGAAAATGTAATCGAAGAGGAAGGTAATTTAACTCCGCTCAAGTATTTGGAACAGATTCAGTTCGAATCTATTAAAGATGTGTTTGAGGGTGTTGAGTTTGAAAGCGTCGTCCCGTGTAGTATTTGTGATCATCCGCTTAAATCACACACCAATCTAATTCAGCATATTATTGAATATCACGTCGATTTTGAGAGTGCTGATAGTTGGTATTATCCTTGCAACGTCGACAACGTGTGCAATTGTTTTAAGTCAATAGAAGAGGTAAACAGGCACATTCTCGAAGCTCACTATTCTACGACATTAAATTTAGatgatgtttttaatttaaagtgccTCATCTGTAACTTGAAGTTCCTAAACAAGATTGATTTCGCCAGACATGCCTGTGTTGAATCTAATTCGATTGATTTCGCTGGATTGAGCTGTAATGTCTGCAACGCTGAATTTACATCACGacagaaaatgaattttcattttcaatttcatttagtAAATGCTCGGCCCAAAATCTGCCTTATTTGTTTGATTCACTTCAATACAGAAATAGATTTTTACAATCACGTTATGTTTTTTCACGAATCTGTTACAAGTTACGTATGTCCGCATTGTGACCAAACATTTTTGTCCAATCAAATGCTGAAGGAGCATGAAACGAACCATGATCTGCCAAATAATCATACTTGTGAAATTTGTAATAGATCGTACAGCAGCGAGGAATTGTTAAACCAACACGCAGTGTGTCATATgctcaacaaattttataagtGCCCCGTGTGTGATAAACAATTGAATCGTGCATCCCGATTACGGAAACACATCGCTTCGCATGAGCAACCGAAGTTTGGTACAATTTTTTCATGTGACTTATGTGACCTATCGTATGGTGCTGAAAATCGCTTAATAGAACACATTAAAAccattcataatattattgatCGCGAAGAAGTAAATCAACTTTGCAGCAAAACATCAATCGATCATGTATTTTGTTGTGAATATTGTTCAAAACTATACCGCacgtcaaaatatttaaaagaacatCGTAAACTACACGAGGGTATTGGCCAGCCATATGAGTGTGAATACTGCTCGGCAACATACGACAGTTTTAGTAAAATGAGGACACATCAAATTGCGCATGGAGAACACAAAAACGATGGAAACCAATTTCCTGTACAGAAGTTTTTTTTATGCCGTTACAACTGCGATAAATCGTATCGGCATTGGTCTGATTTGTCGCATCACATGAACATGGTTCATTTATCAAAGCCAGTGACGTGTGAAATTTGCCATAggacatttccatttaaatggaattatttgtatcataagaaaacaaaacattcGCGTAAGAGAACTTTTCAATGTGACATGAGTGATGATTGCATGGAGGAATTTCAACGGACCAAGGACTACAACATCCATAAAAACCAGAAACATTCGAAAGTAAAAACTACAAAGATTTGTCGAAAGTGTAAACATGTTATAAATCCAAGCGAGTCGCATGAATGCTATATCGAAGAGGTTACTAATTGTGAACTGTGTGGAAAAACGTTCCAAACTGTAAATGCGTTGAAGATCCATATAAAGGTGGTCCACGATAGGATAATCAACTATCGTTGCGAATACTGCAATCGGGGATTTTATAATAGTTCGGATAAAAATATTCATCTGAGAATTCATACACAGGAGAAACCATTTCATTGTACTAATTGTTCGTATGAATGTCGTTCGCAATCAACACTTTCCGAGCACATGAGAACTCACACGGATCAGCGTCCTTATATCTGTCCATATCCCAAATGTGGTGCAAATTTTCGACGATCGTATGCAATgaaaactcattttaaaatccataGTGGTGAACGGAAttttaaatgtaCGTACGAGGATtgtacaaaaacatttcgatcTCAGTCACAATTAAATTACCATTTTAAAAAGAAGCACTTCAGCGCAGATGTCGGGAAAATAGAATCAGTGACTGAGAATTTGTTTGAGGTCACAGACGGGATTGAAACTATTTCAAATGATGGCGATGATCTATCAATCGAATGCCATTTCCTATTAGATCATAGAGAGATTACCaatgaataa
- Protein Sequence
- MNISVENVKYETKSDIQKLILNCIGKDVTFTGEFQQLICAPCLQQLKQIEEFKHKCGENRDNGIVKHNTAALTSDNLLSTGIIITLDACEDYEVLENVIEEEGNLTPLKYLEQIQFESIKDVFEGVEFESVVPCSICDHPLKSHTNLIQHIIEYHVDFESADSWYYPCNVDNVCNCFKSIEEVNRHILEAHYSTTLNLDDVFNLKCLICNLKFLNKIDFARHACVESNSIDFAGLSCNVCNAEFTSRQKMNFHFQFHLVNARPKICLICLIHFNTEIDFYNHVMFFHESVTSYVCPHCDQTFLSNQMLKEHETNHDLPNNHTCEICNRSYSSEELLNQHAVCHMLNKFYKCPVCDKQLNRASRLRKHIASHEQPKFGTIFSCDLCDLSYGAENRLIEHIKTIHNIIDREEVNQLCSKTSIDHVFCCEYCSKLYRTSKYLKEHRKLHEGIGQPYECEYCSATYDSFSKMRTHQIAHGEHKNDGNQFPVQKFFLCRYNCDKSYRHWSDLSHHMNMVHLSKPVTCEICHRTFPFKWNYLYHKKTKHSRKRTFQCDMSDDCMEEFQRTKDYNIHKNQKHSKVKTTKICRKCKHVINPSESHECYIEEVTNCELCGKTFQTVNALKIHIKVVHDRIINYRCEYCNRGFYNSSDKNIHLRIHTQEKPFHCTNCSYECRSQSTLSEHMRTHTDQRPYICPYPKCGANFRRSYAMKTHFKIHSGERNFKCTYEDCTKTFRSQSQLNYHFKKKHFSADVGKIESVTENLFEVTDGIETISNDGDDLSIECHFLLDHREITNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01052530; iTF_01053690;
- 90% Identity
- -
- 80% Identity
- -