Napp065090.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371225.1:119984654-119987185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0059 1.3 11.7 0.5 2 23 151 173 150 173 0.93 2 18 1.8 4.1e+02 3.8 1.0 2 20 223 241 222 243 0.90 3 18 2.5 5.5e+02 3.4 3.7 2 20 254 272 253 275 0.81 4 18 7.8 1.7e+03 1.9 0.2 3 23 284 305 283 305 0.91 5 18 0.0016 0.35 13.5 1.2 1 23 311 333 311 333 0.96 6 18 0.00058 0.13 14.9 0.4 1 19 339 357 339 359 0.96 7 18 1.3e-05 0.0028 20.1 0.3 1 23 367 389 367 389 0.98 8 18 0.017 3.7 10.3 0.1 1 23 398 421 398 421 0.97 9 18 0.01 2.3 10.9 6.0 1 23 442 464 442 464 0.97 10 18 0.0011 0.24 14.0 0.6 1 23 471 493 471 493 0.97 11 18 0.00012 0.027 17.0 3.8 3 23 511 533 509 533 0.92 12 18 0.0014 0.31 13.6 2.4 2 23 539 561 538 561 0.97 13 18 4.3 9.5e+02 2.7 1.0 1 23 567 593 567 593 0.94 14 18 0.00013 0.03 16.9 0.2 3 23 625 646 623 646 0.96 15 18 3e-05 0.0066 18.9 1.3 1 23 652 674 652 674 0.99 16 18 0.0012 0.27 13.8 6.5 1 23 680 702 680 702 0.98 17 18 0.00068 0.15 14.6 0.5 1 23 708 732 708 732 0.97 18 18 0.00013 0.029 16.9 4.7 1 23 738 763 738 763 0.97
Sequence Information
- Coding Sequence
- ATGAATATTTCGGTTGAAAATGTAAAATGTGAGTGTTGTTTGTGTGAGATTGACGAAAATGTACAATTTCAATATATTTTTTGTGAAGATGAAACTACATCCGACATTCAAAAGTTGATTTTAAATTGTTTTGGAAAAATTGTGACGTTTACTGGTGAATTCCGACAATTAATTTGTGCGTCTTGTCTACAGCAATTAAAACAAATTGAAAAACGCATATGTAGCGAAAATAAAGATAACGGTGTTGTTAAACACAACACCGCTGTTGTAACACCCGATACTTTACCATCTACGTTTATCATAACCACATTAGATAAATGTGAAGATTATGAAGTCCTTGAAAATATGCTCGAAGATGAAGCTAATTTAACCCCACTCAAATATTTGGAACAAATTCAGTTCGAATCTATTAAAGATGTGTTTCAGGATGTAGAATTTGAAAGTGTCGTCCCGTGTAGTATTTGTGATCATCCACTTAAATCACACACAAACCTAATTCAGCATATTATTGAATATCACGTCGATTTTGAGAATGCTGATAGTTTGTATTATCCTTGCAACGTCGACAGCATGTGCAATCGTTTTAATTCAATAAAAGAGGCAAACAGGCACATTCTCGAAGCTCATTATTCTACGACATTAAATTTAGATGATGTTTTTAATTTAAAGTGCCTCATTTGTAACATGAAGTTCCTAAACAAGATTGATTTTAGCAAACATGCCTGTGTTGAATCTAATTCGGATGATTTCGCTGGATTGAGCTGTAATGTCTGCAACACTGAATTTAAATCACGACACAAAATGAATTTTCATTTTCAATTTCATTTAGTAAATGCTCGGCCCAAAATTTGCCTTGTTTGTTTGATTCAGTTCAATACAGAAATAGATTTTTACAATCATGTTATGTTTTTTCACGAATCTTCTACGAGGTTCGTGTGTCCGCATTGTGGCCAAACATTTTTGTCCAATCAAATGCTTAAGGAGCATGAAACGAGCCATGATCTGCCAAATAATCATACTTGTGAAATTTGTAATAAAACGTACAGCAGCGATGAATTGTTAAAAAAACACGCAGTGTGTCACATGCTCAACAAATTATATAAGTGCCCCGTGTGTGATAAGCAATTGAATCGGGCATCCCGATTACGGAAGCACATCGCTTCACATGAACAACCAAAGTTTGGTACAATTTTTTCGTGTGACTTATGTGATCAATCGTATGGTGGTGAAAATCGCTTAATAGAACACATTAAAACCATTCATAATATCATTGATCGCGAAGAAATAAATCAACTTTGCAGCAAAACATCAATCGATCATGTATTTTGTTGTGAATATTGTTCAAAACTCTATCGAACATCAAAATATTTAAAAGAACATCGTAAATTACACGAGGGCATTGTCCAGCCATATGAATGTGAATACTGCTCGGCAACATACGACAGTTTTAGCAAACTGAGGACACATCAAATTGCGCATGGGGAACATAAAAACGATCGAAACCAATTTCCTGTACAGCAGTTTTTTTTATGCCGTTATAACTGTGATAAATCGTACCGGCATTGGTCTGATTTGTCACATCACATGAACATGGTTCATTTATCAAAGCCAGTGACATGTGAAATTTGTCATAAAATGTTTCCATTTAAATGGAATTATTTGTATCATAAGAAAACTCAACATTCACGAAAGAGAACTTTTCAATGTGACATGAGTGATGATTGCATGGAGGAATTTCAACGGACCAAGGACTACAACATCCATAAAAAGCTGAAACATTCTAAAGTAAAAACAACAAAGACTTGTCGAAAGTGCAAACGTATTATTAATGCAAGCGAGTCGCATGAATGCTATATCGATGAGGTTACTAATTGTGAACTGTGTGGAAAAACGTTTCAAACTGTAAATGCGTTGAAGATCCATATAAAAGTGGTTCACGATCGGATAATCAACTATCGTTGCGAATACTGCAATCGGGGATTTTATAATAGTTCGGATAAAAATATTCATTTGAGGATTCATACACAGGAGAAACCATTTCATTGCACCAATTGTTCTTATGAATGTCGTTCACAATCAACGCTTTCCGAGCACATGAGAACTCACACGGATCAGCGTCCCTATATCTGTCCGTATCCAAAATGTGGTGCAAATTTTCGACGGTCGTATGCAATGAAAACTCATTTTAAAATCCATAGTGGTGAACGGAATTTTAAATGTACGTACGAGGATTGTACAAAAACATTTCGATCTCAGTCACAATTAAATTACCATTTTAAAAAGAAGCATTTGAGTGCGAATGTCGCACAAATAGAGACAGCGGTGACTGATAATACGTTTGAGACCGAAGACGGGATTGAAACTATTTCAAATGATGGAGATGATCTATCAATCGAATATCGTTTCATATGA
- Protein Sequence
- MNISVENVKCECCLCEIDENVQFQYIFCEDETTSDIQKLILNCFGKIVTFTGEFRQLICASCLQQLKQIEKRICSENKDNGVVKHNTAVVTPDTLPSTFIITTLDKCEDYEVLENMLEDEANLTPLKYLEQIQFESIKDVFQDVEFESVVPCSICDHPLKSHTNLIQHIIEYHVDFENADSLYYPCNVDSMCNRFNSIKEANRHILEAHYSTTLNLDDVFNLKCLICNMKFLNKIDFSKHACVESNSDDFAGLSCNVCNTEFKSRHKMNFHFQFHLVNARPKICLVCLIQFNTEIDFYNHVMFFHESSTRFVCPHCGQTFLSNQMLKEHETSHDLPNNHTCEICNKTYSSDELLKKHAVCHMLNKLYKCPVCDKQLNRASRLRKHIASHEQPKFGTIFSCDLCDQSYGGENRLIEHIKTIHNIIDREEINQLCSKTSIDHVFCCEYCSKLYRTSKYLKEHRKLHEGIVQPYECEYCSATYDSFSKLRTHQIAHGEHKNDRNQFPVQQFFLCRYNCDKSYRHWSDLSHHMNMVHLSKPVTCEICHKMFPFKWNYLYHKKTQHSRKRTFQCDMSDDCMEEFQRTKDYNIHKKLKHSKVKTTKTCRKCKRIINASESHECYIDEVTNCELCGKTFQTVNALKIHIKVVHDRIINYRCEYCNRGFYNSSDKNIHLRIHTQEKPFHCTNCSYECRSQSTLSEHMRTHTDQRPYICPYPKCGANFRRSYAMKTHFKIHSGERNFKCTYEDCTKTFRSQSQLNYHFKKKHLSANVAQIETAVTDNTFETEDGIETISNDGDDLSIEYRFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054624;
- 90% Identity
- iTF_01053690;
- 80% Identity
- -