Ngue041619.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829914.1:287933771-287935942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.8 5.6e+02 3.2 0.0 5 21 132 148 131 149 0.90 2 17 0.00014 0.027 16.8 0.8 1 23 156 178 156 178 0.98 3 17 0.0036 0.7 12.3 0.8 1 23 184 206 184 206 0.98 4 17 5.3 1.1e+03 2.3 0.0 2 12 211 221 210 224 0.85 5 17 0.012 2.3 10.6 0.7 2 23 279 300 279 300 0.96 6 17 3.9e-05 0.0077 18.5 0.9 1 23 322 346 322 346 0.98 7 17 0.034 6.7 9.2 1.7 2 23 353 374 352 374 0.89 8 17 0.0028 0.54 12.6 1.8 1 20 380 399 380 402 0.95 9 17 0.0051 0.99 11.8 0.5 2 23 407 428 406 428 0.96 10 17 0.00013 0.026 16.8 0.3 2 23 474 495 473 495 0.96 11 17 4.2 8.3e+02 2.6 0.2 1 9 501 509 501 523 0.79 12 17 7.4e-05 0.015 17.6 2.5 1 23 529 551 529 551 0.97 13 17 0.00019 0.038 16.3 0.9 3 23 559 579 557 579 0.94 14 17 0.015 3 10.3 0.2 5 23 591 610 585 610 0.85 15 17 0.00034 0.067 15.5 1.0 1 23 616 638 616 638 0.96 16 17 3.1e-05 0.0061 18.8 3.7 1 23 644 666 644 666 0.99 17 17 0.00029 0.056 15.7 0.1 1 20 672 691 672 693 0.94
Sequence Information
- Coding Sequence
- atgtcTTATGAAATAGATAGTACATGCCGCAGTTGTTTAAAAGACACAGCGACAGATATTTCCGTATCGCTATTCGAATATTGTTGCGTAGATtcgaataattttcttatttcggatctctttgaaatatttacaaatttagacATCGATAAAGATGATAATCTTCCGACTAAAATCTGTGAAAGTTGTCTGGATGAGTTAATATCGGTGTACCGGTTCCAAAGAAAATGCCTGCGATCCGATGAGATTTTGAAAGCAGGCGCAACGAATTGTGATTCCGCTGGCGATGTAGAGTTTAAAGAAGAGTACCTAAACGATGCTGAGGCATGCAATCAAACTGAAATGgaacaattaaatgaaacctcggaaaatgagcaaaattacACAGCCGATGATTGCAATGAATCCTGCACATCACCACCGGACTATTCGATACACAAAATGATAAGTAATCCCAAACACTGGTACAATTGCGATTACTGTGATAAAGGATTTCCgcgaaaaattatgaaattaaaccATCAACGCATTCACACTAGGGACCATTCATTCAAGTGTGCCGTGTGTTCAGAATCCAAAACGACAAAATCGGCCCTCCTAAAACACTTGACAAcgcatataaataaattgagatGTGATGTGTGTGATCTCAATTTTGAAAGTTACAGGTTAGAAGTGCTTCACTTTACAAGAAAAGAGAACTGCCCAAAGCACCAAGTTGCCCGTAGTGATTTTTCGCAAAATCCACTATTAGATACAGAAGAGATAATGGCCCGGAAGCAAATCAATACAATTCAATGGAATAGTAAGTCGAAAAAAAAGAATTTGCAAGCGCAGTGTAAAATCTGTGCGATCGAATGTTCAACAACGGCCGAACTTCAAAAACATTTAGAacttcacaaaaatatcgaacttGACATTAATCCATCTACTCCTAAAATAAGGGGGGACCGTGTTATCAATTACAAATGTCCCGAATCAAAGTgcggaaaaatatttactagcTCAATATCATACCGTGAACATAAGAAAATCCATAATCCCGAGAGTGCCGTGAAATGCGATTACTGCGAAAAAATGTTCTCGTCCAAAGCTAGGCGAGAACCTCATCATCGCGTACATCGTGGTGAACGACCTTACAAATGTAGTGTATGTCCAGAAGCACGAACCACTAAATCAACGTTGCTTAAGCATTTGCTGTGCCATGCCCGATCCTTAAAATGTAAACCGTGTGggcttaattttgaatcatCTCGGTCGTATGTTTCACACATGAAAATACacgaagaagatccaaattatGAACCGAACAATGATTCTGAACCCGAAGAAGAACTAGATGAAAATCAACGGAAATTACGAGAACATATCGAGGAAATACGTTCGACGTCACTGGCCCAGAAACGAAACATAAACACAAAATGTACGGTTTGTTATCGAGAATTCGCAACACCGAGCGAATTAAAATTGCATACGGAGATACATCAAGATGTCGGTGATTATTTGTGCACGATATGCGGAAAAATTTCGCTGACGAAAGCGGGACATCGTGAACATCTGGCCTTACACGGATCTAGTAGCCCGTTCCAATGTCAATATTGTAATGAAGTATTCTCTTCAAACCATCGATTGAAGGTTCATGTTCTGCAACACACCGGTGAACAACCACATCTCTGCAAAGTTTGTGGTAAATCATTTTCCACTGCGATCGTTCTGCGTATACACAATCGTCTGCATACCGGTGAAAAGCCGTTTAAATGTATCGTTGATGGGTGTACGGCTGCATTTCGCACTGCAAGCAAATTAAATCGTCATCGTATTGCGACACATACGAATATTCGGCCATTTGAGTGTACTATTTGTTCGAAAAAGTTCGCATTCTCTGACGAATATAAATCGCACTCTTTAATACATTCAACTAACACGCCGTATGAATGTGGTGTATGCGGCAAAGGATTTTACAAAAACCACTGTCTGAAATCTCATTTACGGATTCATACGGGCGAAAAACCATATGAATGTGAAGTATGTGGTAAAGCATTTCGATTGCGGAATGCTCTAACCAGTCACTCGAAAGCATGTAAAGTTAACGGAGATGAAACGGAAAGCAATTAA
- Protein Sequence
- MSYEIDSTCRSCLKDTATDISVSLFEYCCVDSNNFLISDLFEIFTNLDIDKDDNLPTKICESCLDELISVYRFQRKCLRSDEILKAGATNCDSAGDVEFKEEYLNDAEACNQTEMEQLNETSENEQNYTADDCNESCTSPPDYSIHKMISNPKHWYNCDYCDKGFPRKIMKLNHQRIHTRDHSFKCAVCSESKTTKSALLKHLTTHINKLRCDVCDLNFESYRLEVLHFTRKENCPKHQVARSDFSQNPLLDTEEIMARKQINTIQWNSKSKKKNLQAQCKICAIECSTTAELQKHLELHKNIELDINPSTPKIRGDRVINYKCPESKCGKIFTSSISYREHKKIHNPESAVKCDYCEKMFSSKARREPHHRVHRGERPYKCSVCPEARTTKSTLLKHLLCHARSLKCKPCGLNFESSRSYVSHMKIHEEDPNYEPNNDSEPEEELDENQRKLREHIEEIRSTSLAQKRNINTKCTVCYREFATPSELKLHTEIHQDVGDYLCTICGKISLTKAGHREHLALHGSSSPFQCQYCNEVFSSNHRLKVHVLQHTGEQPHLCKVCGKSFSTAIVLRIHNRLHTGEKPFKCIVDGCTAAFRTASKLNRHRIATHTNIRPFECTICSKKFAFSDEYKSHSLIHSTNTPYECGVCGKGFYKNHCLKSHLRIHTGEKPYECEVCGKAFRLRNALTSHSKACKVNGDETESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01052521;
- 90% Identity
- -
- 80% Identity
- -