Ngue021763.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829914.1:19358106-19360321[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 32 7.0 0.3 1 23 114 137 114 137 0.92 2 12 0.0051 1 11.8 2.8 2 23 265 287 264 287 0.96 3 12 7.9e-06 0.0015 20.6 6.3 1 23 293 315 293 315 0.98 4 12 2.2e-05 0.0044 19.2 1.9 1 23 321 343 321 343 0.98 5 12 7.1e-05 0.014 17.6 4.3 1 23 349 372 349 372 0.94 6 12 9.6e-07 0.00019 23.5 2.2 3 23 387 407 386 407 0.98 7 12 0.095 19 7.8 3.8 2 23 414 435 413 435 0.96 8 12 2.8e-06 0.00056 22.0 0.4 1 23 441 463 441 463 0.96 9 12 2.1e-06 0.00041 22.5 0.7 1 23 469 491 469 491 0.98 10 12 9.1e-07 0.00018 23.6 0.7 3 23 499 519 497 519 0.96 11 12 2.9e-07 5.7e-05 25.2 1.2 1 23 525 547 525 547 0.99 12 12 0.0015 0.29 13.5 1.5 1 23 552 575 552 575 0.97
Sequence Information
- Coding Sequence
- ATGGATCCGATTTCAGGAAGTACCACTGTTCTGAAATTAGACTTGGTATGTCGAACATGTTTAAATGAATCGAGTAATATGAAACCGATATTTGTGGAAGATGGGAATGATATTTGTAAAATGTTACAAACTTGTTCCGGGTTAAATATCCATCCCATGGATGGATTCCCGACTAACATCTGCTCGGACTGTTTGAATAAAGTACATATTTCGTTCGAGTTTCGACAGCAATGTGAGATTTCACACAAtgcattgttaaattttatgggGGCAAAACTAAATGGGGATCAAGATGATCCCACACGAATCGATACCAAATTGGTGACAGACTATGAAATATATAAGTGTAGTCTCTGTCCGAATCAGTATACAATGCTACCCCAGCTACAGGAACATTTTATACAAGATCATCCAGATGGGACCTACGAAACTAAGCTAGAGGatacaaatttgctcataattaaTGGGAGTTCCGATGTAGTGACCGAGGGTGATAATAGCTCTAATGCAATGGACATTAAAGGCGATAGTGCGGAGGAGAAATACATGATTTTCACAGAGCCCGACGTatcaattgtaaattttaaagagGATGAAGAAGATCAGGAAGATGAAGAAGATTATCCACAAAGTGAGGAGGAATCCGATAATGAAAGCGAAACCAGCATGAGCAATGGAATGATAATCTATGATGAGGAAGATGATACGATCAGCGACGATAAAGAAGATGAACAATACGCcgaaaggaaaataaaatcatcGGATGATAGTAATAAACAAAACGAACCATCAACTTGTACACATTGTAATCTAATGTTCGATAAGAAGTCCAAGTATTATCTCCATATGGAATCAGTGCACAAAGAGGTTAAGCTGCATCAATGCGAGCAATGTGACAAAAAATTCTCCAGGCTCACACATCTGCGGCGTCATCAAGTAACTCATTTAGACGTGAAACCGTATCCCTGCGGTCAGTGTGATAAGCGCTTTTCTCGCAGGGACCATAGAAACATTCATTTACGAGCACATTCGAACATCAAGCCACACAAATGTGATCAATGTGTTAAGGCATTCACACGGCCAGAGCATTTACGAAAGCATCGAGAGAATCGGCACGGGGTACCGGTTATAAAGCCAACGCCTTCGAAAAcagaattttgtgaaatttgccATAAGTCGTTCAGAACACCGAAATATCTTCAAATCCATATGAAAGTGCATCGGACCGTAAAGGAATGGACGTGTAAATTCTGCCAagaaaaatttacttcaaaGCAAGAGCATAATGATCATCAGAAAGTACATGTGAATGAGCGACCTTTCTTATGCTCTGAATGTGGTTTACGATTTGTCCGTAACGATTATCTAGTAATCCATATGAGGCGTCACAAAGGTGAGAAACCttacaaatgtaaattttgtggTAAGGGATTCCCGCGGGCTACTGACCTAACGGTGCATGAAAGGTACCACACGGGCGAGAAAACACATTTGTGCACGATATGCGGCAAGGGATTTCAACGTGCCTACAATTTGTTGGTACATATGCGAGTGCATACCGGAGAACGGCCTTATAAATGCCCGCATTGCGATAAGAGTTTTGCGCAAGGGAACGATTTAAAGGCGCATGTACGGCGACACACAGGCGAACGGTTTAAGTGCGATATATGTGGTGATGGTTTTATCCAAGGCTACCACCTAACGCAACACAAGCGCAATCAACATGGAATCGATATGAAATCGCACATTAGACGGGTAGAAAAGTTTATTACGCCAATAGCCCAGCAGCAACGTGTATtggaacaacaaaaaatggcaGAGGAGCAAAGAACAAATCCATCCGCACATGTCATATCAGTACATCCGAGTAAGCAGCCAATTGAAAATCGACTACAAGAAAcgaaatcaaatatttcaaaattaacggTAATTCCAGAGTTTGAATTACGGCATCAGGAAATAATTACAATACCATCACCGTCACTCCAGTTACATCCccaacagcagcaacaacaaattcTATATGCTccacagcaacaacaaatatcGAGGGGTGTGCATATGCTGGATGTTAACGAGACTATTGTGAAAATGGAGCAGATCGACGAAATAAATCAAATCTCAACGATAATGAATTatcagaattaa
- Protein Sequence
- MDPISGSTTVLKLDLVCRTCLNESSNMKPIFVEDGNDICKMLQTCSGLNIHPMDGFPTNICSDCLNKVHISFEFRQQCEISHNALLNFMGAKLNGDQDDPTRIDTKLVTDYEIYKCSLCPNQYTMLPQLQEHFIQDHPDGTYETKLEDTNLLIINGSSDVVTEGDNSSNAMDIKGDSAEEKYMIFTEPDVSIVNFKEDEEDQEDEEDYPQSEEESDNESETSMSNGMIIYDEEDDTISDDKEDEQYAERKIKSSDDSNKQNEPSTCTHCNLMFDKKSKYYLHMESVHKEVKLHQCEQCDKKFSRLTHLRRHQVTHLDVKPYPCGQCDKRFSRRDHRNIHLRAHSNIKPHKCDQCVKAFTRPEHLRKHRENRHGVPVIKPTPSKTEFCEICHKSFRTPKYLQIHMKVHRTVKEWTCKFCQEKFTSKQEHNDHQKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYKCPHCDKSFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNQHGIDMKSHIRRVEKFITPIAQQQRVLEQQKMAEEQRTNPSAHVISVHPSKQPIENRLQETKSNISKLTVIPEFELRHQEIITIPSPSLQLHPQQQQQQILYAPQQQQISRGVHMLDVNETIVKMEQIDEINQISTIMNYQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01052513;
- 90% Identity
- iTF_01052513; iTF_01053674;
- 80% Identity
- -