Napp025485.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:358013912-358016147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 40 7.0 0.1 1 23 114 137 114 137 0.96 2 12 0.0095 2.1 11.0 5.2 2 23 268 290 267 290 0.96 3 12 8.6e-06 0.0019 20.6 6.3 1 23 296 318 296 318 0.98 4 12 2.4e-05 0.0054 19.2 1.9 1 23 324 346 324 346 0.98 5 12 7.8e-05 0.017 17.6 4.3 1 23 352 375 352 375 0.94 6 12 6.6e-07 0.00015 24.1 0.7 3 23 390 410 389 410 0.98 7 12 1.1 2.4e+02 4.5 3.6 2 23 417 438 416 438 0.96 8 12 3.1e-06 0.00068 22.0 0.4 1 23 444 466 444 466 0.96 9 12 2.3e-06 0.0005 22.4 0.7 1 23 472 494 472 494 0.98 10 12 7.9e-06 0.0017 20.7 0.8 3 23 502 522 500 522 0.96 11 12 3.2e-07 7e-05 25.1 1.2 1 23 528 550 528 550 0.99 12 12 0.0016 0.35 13.5 1.5 1 23 555 578 555 578 0.97
Sequence Information
- Coding Sequence
- ATGGATCCGATTTCAGGAAGTACCACTGTTCTGAAATTAGACTTGGTATGTCGAACATGTTTAAATGAATCGAGTAATATGAAACCGATATTTGTGGAAGATGGGAATGATATATGTAAAATGTTACAATCTTGTTCCGGATTAAATATCCATCCCATGGATGGATTCCCGACTAACATCTGCTCAGACTGTTTGAATAAAGTACATATTTCGTTCGAGTTTCGGCAACAATGTGAGATTTCGCACAATGCATTGTTAAATTTTATGGGGGCAAAACTAAATGGGGATCAAGATGATCCTACACAAACCGATACCAAATTGGTGACAGATTATGAAATATATAAGTGTAGTCTCTGTCCAAATCAGTATGCAATGCTACCTGAGCTACAGGAACATTTTATAACAGATCATCCAGAAGGGACCTACGAAACTAAGTTGGAGGATACAAATTTGCTCATAATTAATGGGAGTTCGGATGTAGTGACCGAGGGTGATAATAGTTCTAGTGCAATGGACATTAAATCCGATTGTGCGGATGAGAAATACATGATTTTCACAGAGCCTGACGTATCGATTGTAAATTTTAAAGAGGATCAGGAAGATGAGGAAGATCAGGAAGATGAAGAAGAATATCCACAAAGTGAAGAGGAATCCGATAATGAAAGCGAAACCAGCATGGGCAATGGCATGTTAATCTATGATGAGGAAGATGACACGATTAGCGACGATAAAGAAGATGAGCAATACGCCGAAAGGAAAACAAAATCATCGGATGACAGTGGTAAACAAAACGAACCATCAACATGTACGCATTGTAATCTAATGTTCGATAAGAAGTCGAAGTATTATCACCATATGGAATCGGTGCACAAAGAGGTTAAGCTGCATCAATGCGAGCAATGTGACAAAAAATTCTCTAGGCTGACACATCTGCGGCGTCATCAAGTAACTCATTTAGACGTGAAACCGTACCCCTGCGGCCAGTGTGATAAGCGCTTCTCTCGCAGGGACCATAGAAACATTCATTTACGAGCACATTCGAACATCAAGCCACATAAATGTGATCAATGTGTTAAGGCATTCACGCGGCCAGAGCATTTACGAAAGCATCGAGAGAATCGACACGGTGTACCGGTTATAAAGCCAACGCTTTCGAAAACAGAATTTTGTGAAATTTGCCAAAAGTCGTTCACAACACCGAAATATCTTCAAATCCATATGAAAGTGCACCGAACCGTAAAGGAATGGACTTGTAAATTCTGCCAAGGAAAATTCACTTCAAAGCAAGAGCATAATGATCATCAGAAAGTGCATGTGAATGAGCGACCGTTTTTATGCTCTGAATGTGGTTTACGATTTGTCCGTAACGATTATCTAGTGATCCATATGAGGCGTCACAAAGGTGAGAAACCTTACAAATGTAAATTTTGTGGCAAGGGATTCCCGCGGGCTACTGATCTAACGGTGCACGAAAGATATCACACGGGCGAAAAAACACATTTGTGCACGATATGCGGCAAAGGATTTCAACGTGCCTATAATTTGCTGGTACATACGCGAGTGCATACCGGAGAACGGCCTTATAAATGCCCGCATTGCGATAAAAGCTTTGCGCAAGGGAACGACTTAAAGGCGCATGTACGGCGACACACGGGCGAACGGTTTAAGTGCGATATATGTGGCGATGGTTTTATCCAGGGCTACCACCTAACGCAACACAAGCGCAATCAACATGGAATCGATATGAAATCGCACATTAGACGGGTAGAAAAGTTTATTACGCCAATAGCCCAGCAGCAACGAGTTTTAGAGCAACAAAAAATGGCAGAGGAGCAAAGAACAAATCCATCCGCACATGTCGTATCAGTACATCCGCATCCGAATAAGCAGCAAATTGAGAATCGACAACTACAAGAAACGAAATCAAATATGTCAAAATTAACGGTAATTCCAGAGTTTGAATTACGGCATCAGGAAATTATTACAATAGCATCACCGTCACTCCAGTTACATCCCCAACAACAGCAACAACAACAGATTCTATATGCTCCACAGCAACAACAAATACCGAGGGGTGTGCATATGCTGGATGTTAACGAGACAATTGTAAAAATGGAGCAGATCGACGAAATAAATCAAATCTCAACGATAATGAATTATCAGAATTAA
- Protein Sequence
- MDPISGSTTVLKLDLVCRTCLNESSNMKPIFVEDGNDICKMLQSCSGLNIHPMDGFPTNICSDCLNKVHISFEFRQQCEISHNALLNFMGAKLNGDQDDPTQTDTKLVTDYEIYKCSLCPNQYAMLPELQEHFITDHPEGTYETKLEDTNLLIINGSSDVVTEGDNSSSAMDIKSDCADEKYMIFTEPDVSIVNFKEDQEDEEDQEDEEEYPQSEEESDNESETSMGNGMLIYDEEDDTISDDKEDEQYAERKTKSSDDSGKQNEPSTCTHCNLMFDKKSKYYHHMESVHKEVKLHQCEQCDKKFSRLTHLRRHQVTHLDVKPYPCGQCDKRFSRRDHRNIHLRAHSNIKPHKCDQCVKAFTRPEHLRKHRENRHGVPVIKPTLSKTEFCEICQKSFTTPKYLQIHMKVHRTVKEWTCKFCQGKFTSKQEHNDHQKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCDKSFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNQHGIDMKSHIRRVEKFITPIAQQQRVLEQQKMAEEQRTNPSAHVVSVHPHPNKQQIENRQLQETKSNMSKLTVIPEFELRHQEIITIASPSLQLHPQQQQQQQILYAPQQQQIPRGVHMLDVNETIVKMEQIDEINQISTIMNYQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053674; iTF_01054602;
- 90% Identity
- iTF_01054602;
- 80% Identity
- -