Basic Information

Insect: Nephrotoma flavescens
Gene Symbol: PATZ1
Assembly: GCA_932525705.1
Location: CAKOBH010000712.1:327757-329429[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00077 0.14 14.4 1.7 1 23 155 177 155 177 0.99

2 10 0.0057 1 11.7 6.3 1 19 183 201 183 207 0.93

3 10 1.1e-05 0.0019 20.2 1.8 1 23 213 235 213 235 0.97

4 10 3.5e-05 0.0064 18.6 4.3 2 23 242 263 241 263 0.97

5 10 5.8e-06 0.001 21.1 1.3 2 23 269 291 269 291 0.97

6 10 0.0028 0.51 12.6 0.2 3 23 346 366 344 366 0.95

7 10 2.6e-05 0.0047 19.0 0.7 1 23 385 407 385 407 0.97

8 10 3e-05 0.0055 18.8 0.8 1 23 413 436 413 436 0.95

9 10 0.00041 0.075 15.2 0.1 1 23 444 466 444 466 0.98

10 10 3.6e-05 0.0066 18.6 1.7 1 23 472 495 472 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00077	0.14	14.4	1.7	1	23	155	177	155	177	0.99
2	10	0.0057	1	11.7	6.3	1	19	183	201	183	207	0.93
3	10	1.1e-05	0.0019	20.2	1.8	1	23	213	235	213	235	0.97
4	10	3.5e-05	0.0064	18.6	4.3	2	23	242	263	241	263	0.97
5	10	5.8e-06	0.001	21.1	1.3	2	23	269	291	269	291	0.97
6	10	0.0028	0.51	12.6	0.2	3	23	346	366	344	366	0.95
7	10	2.6e-05	0.0047	19.0	0.7	1	23	385	407	385	407	0.97
8	10	3e-05	0.0055	18.8	0.8	1	23	413	436	413	436	0.95
9	10	0.00041	0.075	15.2	0.1	1	23	444	466	444	466	0.98
10	10	3.6e-05	0.0066	18.6	1.7	1	23	472	495	472	495	0.97

Sequence Information

Coding Sequence: ATGGATATAAAAATTGACATGAGTTCATGTCGGGTTTGTTTCAAAAATGTTGGTGTAATACCCCTTTTTAGCGATTACGGGGACGGAGTACCAGCAGAAACAATAAGTTCACTCTTCAATATTTATATAAGCTGTGCTGTAAATATACCAAATGCGGTGTGCGAAATATGCATGGAAAATATAAAAATTGCTATAAGCTTAAAAGATGCAATTGTTTGTGCGGAGAACATGTTAAATGACTATCTGGCATCAAACAATTCATTTGAAATTGAAGAAGCGGGAAACATTCCAATCAATGAATATGATATTTCTGACCATTATCTACCCATATTAGATAATTTGGATGTTTCGGAACATTTAAAAATTGAACATAAGGATGACAAAATTTTAGATAGTTCAGAAAAGCACGAAGCGATTAAATGTTATGAGGATATATCGTCAGAATTCATTAGTTCTCAATTGTATGAATGTCTTAAATGTAAAGTCAAAACAGATACCTATAAACAATTGATCCAACATATGCGATCTCATTCTGACATTGCCTTGTATGAATGTGAAACTTGCGGAAAAGAATATAAACGTCGACATCATTATGTTAAACATGCATTTCATTTTCGTCACGATGACGATAGGCCATGCAAATGTAAGGAATGTGGTAAAGGCTTTAAGTTTCCCTGGTATCTTGCCCAACATCTTTCAACCCACCAAACGGAGAGAATTATTCCTTGCGAGCATTGTGATAAAACGTTTTGTCATATGAAAGCACTAACTGCACACTTACTAACCCACAATGAAGAAACTGAAGTATGTGAGATTTGTGGTAAACTATTTAAACACTCAACATTTTTAAAAGTTCATATTAGAACAGTGCATGGTTTACCTACTGAACGCAGTGGTAAAACCGCAAATTCACGGCGGCAAGTTACTTGTGAATTTTGTGGGAAATTAATGTGTTACACTAATCTGAAGAAGCATATTCAAGCTCATCATAACGACTCAATAGCCGTTAAACCAGATTCCGGCAACGCGATTATTTGCTTATATTGCAATAAAAAATTGTTCTACAATTCCGGTTTAATGATACATATGCAAGCGCATATTAATAAAAAAGAAATCCCGTTGGATATTAAAACGAAGGAAAAATATTTAAAATATAAATGTGATGAGTGTGATAAATTCTTTGTGAGTGCTTTACTTTTGAAAAAACATAAAATCCTACACTCAGGCATTAAAGAGCATGCATGTCCATATTGCGGAAAAGAATTTGCATTTAAAATGTATTTAGACCGCCATGTGCGTTTACTGCACGATAAAACTAATCCAAAAAATTTTAATTGCCAAATATGTGGTAAAGTTTCTACATTTGAAGCAGCTAGACAGGCACATATGCTTACGCATACCCGACAAACACCGTTCGAATGTAAATTTTGTGGTGTGAAATTCAGGTATGCTAAATCACTTCGAATTCACATTAAGAACAAACATTAA
Protein Sequence: MDIKIDMSSCRVCFKNVGVIPLFSDYGDGVPAETISSLFNIYISCAVNIPNAVCEICMENIKIAISLKDAIVCAENMLNDYLASNNSFEIEEAGNIPINEYDISDHYLPILDNLDVSEHLKIEHKDDKILDSSEKHEAIKCYEDISSEFISSQLYECLKCKVKTDTYKQLIQHMRSHSDIALYECETCGKEYKRRHHYVKHAFHFRHDDDRPCKCKECGKGFKFPWYLAQHLSTHQTERIIPCEHCDKTFCHMKALTAHLLTHNEETEVCEICGKLFKHSTFLKVHIRTVHGLPTERSGKTANSRRQVTCEFCGKLMCYTNLKKHIQAHHNDSIAVKPDSGNAIICLYCNKKLFYNSGLMIHMQAHINKKEIPLDIKTKEKYLKYKCDECDKFFVSALLLKKHKILHSGIKEHACPYCGKEFAFKMYLDRHVRLLHDKTNPKNFNCQICGKVSTFEAARQAHMLTHTRQTPFECKFCGVKFRYAKSLRIHIKNKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01053751; iTF_01053746; iTF_01052582; iTF_01052622; iTF_01052569;
90% Identity: -
80% Identity: -