Napp026973.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:377240871-377243421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00016 0.035 16.7 1.0 3 23 250 270 249 270 0.97 2 14 0.00019 0.042 16.4 2.0 1 23 275 298 275 298 0.97 3 14 0.86 1.9e+02 4.9 1.3 3 23 373 394 371 394 0.90 4 14 4.1 9.2e+02 2.7 1.0 3 23 399 420 398 420 0.93 5 14 0.028 6.3 9.5 1.9 3 23 438 458 436 458 0.95 6 14 1.5 3.4e+02 4.1 0.4 1 20 476 495 476 499 0.85 7 14 0.42 92 5.9 0.1 1 23 540 562 540 562 0.96 8 14 6.4 1.4e+03 2.1 2.6 2 23 567 591 566 591 0.91 9 14 0.00019 0.042 16.4 1.1 1 22 597 618 597 618 0.96 10 14 9.5e-05 0.021 17.3 1.3 1 22 625 646 625 646 0.96 11 14 8.5e-06 0.0019 20.6 2.5 3 23 655 675 654 675 0.98 12 14 7.3e-06 0.0016 20.8 0.2 1 23 681 703 681 703 0.97 13 14 0.00046 0.1 15.2 3.3 1 23 709 731 709 731 0.96 14 14 0.039 8.6 9.1 5.7 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGGAACTATCATCTGACTTAGAATTAGACATACCAAATATGTGTCGAGTGTGCTTATTACAAAAAGAAAAGCTGAATAATATCTTTTCAAACTGCATTGTGGAAGGATACGTAATTTCATTGCCTGAAATTATAAAATCCTGCTTAGATTTATATTTACAGAAAGATGATAAAAATTTGCCAAAAAAGATTTGCGATCTTTGCAAAATTCAGGTAATCAATTTTTATTCATTTAAAGAAAAATCCAAGAAGGTCGAGGAAGCGCTAAAAAATCTGTTGAGTTCAACTCGATTGAAAAGTGAAGGATCACCACAGGTAGAGATATTACCAAATAGTGCAAGATCAATTAAAATTGAAAATTCGACTGATGTGGTTGAGTACGACGAACAAGAACTACTTGAGGAACATGATGAAAATTCGACAATGATGACTGAACCCTTACCAACCGTTGAAGCTGTATATCCGCAAGAACAATTTCAATATTCAAATAGCGATCAAACCGAATGTAATGTAAAATTCGATCAAACCGAATGTAATGTAATTCCTGGAAGTGAAATGTGTAGCGCTAAAATTGAGTCAATTGAATCACATGACGAAACATTAGACTGTGAGGAGTTGGTAGAAGAGCGAGAAGAAATCGAGGAAATGGAAGAAGATCTAAGAGAAGAAGATCTAAGAGAAGATCATGAACTGCAACAAGATGCATTAATTGAACCTTCCGAGGTTGTTGATAATTTATCAAATGCTTGTAATATGTGTGACAAAAAATATGAAACCGTAAACAATTTAAAGCGGCACTTGGACAAACATAATGGAATTTTTTTTAAATGCCGATTGTGTCCAAAAATGTACGCGCACCAAGCCTCACGTAATCGCCATATGAGACTTGGGCATCCAAAACAGGTAAATGTTATCATGTTACAAACGGAAAACCCTTTCCAAAGGAACGATCCGGTGAATCCACCAATTAAAATAAATGTTGGTGAAAATTTACAGTCAAAGAGAATCACTAGGTTATCAAAAATTTTGGACGAAAAAAATTCAGATACTTGTGATTTGCAACCTGACCTAGATGTCGAGCAAAATGAGGCAATGGTGGATGATCTTGAATGCTTGTGTACAATTTGCGATGCAAATTTTGAAACTGAACGCATGTTTGTGGAACATTCAAAATTTGAACATCCTGATGTATTTTGTGGTAATTGCAGTAAATTATTTCTTAGCTCAGAGGAGCGAAACAAGCATATGTCTCAAGAACATTTTTATGAATCGAGCAACAGTAAATTAAGTAATATTACTTGCGACAATTTTTGTCGTTTTTGCCAAAAAAAATTTAAATCAGTTATTGAGTTAAATACTCATAGAGAGTTACATGAAACTTTGAATAAATGGATGGGAAATGCCGTATCGCCAATGGTAAGCTTTTTCGCCTGTTACAAATGTAATACGGTTTTCTTAAGTGAACAAAGCCTTCAAGGACATACCGTCGCGAAGCATAGTGAATCACCAAAAAAAATTAATTTAGATGATGACAGTATTGACTGTACCGATTATCAATTCCTCGATGACGATGAAGCTGCAATGGTCGCCCAAAGTAGTTTACAAACAGAAGAACCGTTCAATTGTGGCGTGTGCAATGTCGAATTGTTTAACGAAAATGAAATGCGAAATCATATAATTATTCACTCAAACAAATTGTCTTGCCCATTTGATGAATGTGGATGCGAGTATAATAGTTTCTCTAGATTTAGTTTACACTTAATTCACAGGCATTTAAATCGAGACGTATTCAAATGCATGCATTGTGGAGAATCATACCAGAGCTACGATGATTTGCAGAATCATATAAAAAAAACGTGCCCCGAGCGAAAGTATAATTGTAATCATTGCGATAAAAGTTTTTTTTCGGTTAAAGCGTTGAGCATTCATATGAAAACTTCGATTGAGAAAAAAACGATTCTTTGTCAAACCTGCGGCAAATCTTTTACACATTCAGGCGAATTAAAAATCCATTCGAGAACCCATACAGGAGAGCGTCCTTATAAATGTAATATATGCGGCAAAGCATACAAAACTGCCAGTATGCGAACAGCTCACATGGATGCACATATTCAAGGAAAAACATTCCTCTGTACAATTTGCGATAAAAAGTTACAAACACGGACCAGTTTTCGTACTCATATGCGACGGCACACCGAAGATAAAAAGCATCAGTGTGAAATTTGCTTGAAGAAATTTTTTACCAAATATCACGCTAAACTTCATACGATGAAAATTCATGATAATCCTAACCGAATTCAAAACAAAAATGCTGCTTCCTCGATGCAAGTTTAG
- Protein Sequence
- MELSSDLELDIPNMCRVCLLQKEKLNNIFSNCIVEGYVISLPEIIKSCLDLYLQKDDKNLPKKICDLCKIQVINFYSFKEKSKKVEEALKNLLSSTRLKSEGSPQVEILPNSARSIKIENSTDVVEYDEQELLEEHDENSTMMTEPLPTVEAVYPQEQFQYSNSDQTECNVKFDQTECNVIPGSEMCSAKIESIESHDETLDCEELVEEREEIEEMEEDLREEDLREDHELQQDALIEPSEVVDNLSNACNMCDKKYETVNNLKRHLDKHNGIFFKCRLCPKMYAHQASRNRHMRLGHPKQVNVIMLQTENPFQRNDPVNPPIKINVGENLQSKRITRLSKILDEKNSDTCDLQPDLDVEQNEAMVDDLECLCTICDANFETERMFVEHSKFEHPDVFCGNCSKLFLSSEERNKHMSQEHFYESSNSKLSNITCDNFCRFCQKKFKSVIELNTHRELHETLNKWMGNAVSPMVSFFACYKCNTVFLSEQSLQGHTVAKHSESPKKINLDDDSIDCTDYQFLDDDEAAMVAQSSLQTEEPFNCGVCNVELFNENEMRNHIIIHSNKLSCPFDECGCEYNSFSRFSLHLIHRHLNRDVFKCMHCGESYQSYDDLQNHIKKTCPERKYNCNHCDKSFFSVKALSIHMKTSIEKKTILCQTCGKSFTHSGELKIHSRTHTGERPYKCNICGKAYKTASMRTAHMDAHIQGKTFLCTICDKKLQTRTSFRTHMRRHTEDKKHQCEICLKKFFTKYHAKLHTMKIHDNPNRIQNKNAASSMQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053788;
- 90% Identity
- iTF_01053788;
- 80% Identity
- -