Napp025388.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:356933709-356935411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.054 16.1 2.1 3 23 228 248 226 248 0.96 2 11 2.4e-05 0.0054 19.2 4.2 1 23 254 276 254 276 0.98 3 11 4.6e-05 0.01 18.3 0.3 3 23 284 304 282 304 0.98 4 11 2.8e-06 0.00063 22.1 0.8 1 23 310 334 310 334 0.96 5 11 6.9e-05 0.015 17.8 1.0 2 23 341 362 341 362 0.97 6 11 2.2e-08 4.9e-06 28.8 0.7 1 23 368 390 368 390 0.99 7 11 0.00034 0.076 15.6 0.3 5 23 402 420 396 420 0.88 8 11 1.2e-05 0.0027 20.1 3.8 3 23 431 451 429 451 0.96 9 11 3.9e-05 0.0086 18.6 0.9 1 23 457 479 457 479 0.98 10 11 6.5e-07 0.00014 24.1 0.5 1 23 485 507 485 507 0.99 11 11 5.6e-05 0.012 18.1 0.9 1 23 513 535 513 535 0.97
Sequence Information
- Coding Sequence
- ATGATCGATTGTTCCGAATATATCGATGAAACGGATAAAATTGACTTCGGCAAAATATGTCGTTGTTGTCTGGTTCAAAATTCTATTATGAAGTCCATATACGATGAGGATTTACCTGCCATGCTAATGGCATGCACCACAATCAATATCACGTTGGATGACGGCCTACCCTCGCTAATATGTTCCAGTTGCGATACGCAAATTAAACAGTCTTATTTGTTCCGGCAGTTATGTGAACGTTCGGACGGAACACTACGCCAGTGCTTTGAGTCGCAGCAGATAGCATGTCCGTCCGATTTAAATATAACGCTTAACACGGACATTTTGAATGAAGCGGATGATAATTTAAACCAGTACCAATTGGTCTTGGTCGAGTACGCAACCGGAGATAATTCGACTGTGACTAAAAACGATCTCAATTTAATCTCAGGTCAGAATGAAAACTGTACCGATGAAAATCTGGAAGAGGATATAACGCTAAAAAGTACGCTAGATTTAGCCGACGAGGATCACGAAGCCGTTCAATTCTTGAACGAGGAATTTATTGAAATATTGCAAATTCAAACAAACAAACAGGGTGCTCAGGAATATGTCAATATATGTAACGATGTTTTACCAGCAGCCTCCGAAGATCTCATAGTGGAAGATCCAGCTCCAACGCCAACCGAGGAGGATATAATTTGCGACATTTGTAATAAAATATTTGGCGATAAGCATAAGCTAAGCAGACATAAAAAACAACACATGGCGGAACGTCCGTTCGAATGTAACTTTTGTGACAAAAGCTTTGTGGAGAGGGGCTGTTTGAAAAAGCATCTGAAGCGCCATCGGGGTGAGAAACCGTTCGGTTGCGGAGTCTGTGGTATGAAGTTCTATGACAAATCGAGTCTCGTAAGTCACACTAGGATTCACACAGGCGACAAGCCATTCGTTTGTCAGTTTGAAAATTGCGGAAAGGCGTTTACCCAGTCCTCCCAACTCGAGACACATAAAAAAATTCATAGTACTGAAAAGGCGAATGTCTGCGACATTTGTAACAAACGTTTCACGCTTTATAACCAACTGAAAATCCATAAACGGATCCATACCAATGAGAAACCGTATGAATGTGGTTTCTGTGGCAAGAATTTTTCCCAATCAGGTAACTTAACCACGCACATACGTACCCATACCGGAGATAGGCCTTTCTTGTGCTCATTTAACGCATGTGGACGTAGTTTCGCCTCGGTTGGTGAGCTAAACTCTCATTTGCGTACACATACGGGTCAGAAAATTGAAAAGAAATTGGCGTGCCACGAATGTGGTAAAATGTGCCGAACCCGTTACGAACTGCAAAATCATTTGAACTCACATGCCGGTGTTAAACCATACATATGCAATGTATGTGATAAGAGTTTTTTGATGAGTTCGCATTTGGTGGTGCATATACGGAATCATACGGGCGAGCGACCATACCAATGTGATTTTTGTCCCAAGGCGTTTACAACGCAGCAAATGGTGAAGGCTCATATGCGGATACATACGGGCGAAAAAAAATTCGCTTGCGATATTTGTGAAAGGAGGTTTACGCAGGCATCAGCCAGAAATACGCATCGCAAGACACATTCTCGTGTGTGGCCTAAGCAAAAAAATGTAGAAGCGTGA
- Protein Sequence
- MIDCSEYIDETDKIDFGKICRCCLVQNSIMKSIYDEDLPAMLMACTTINITLDDGLPSLICSSCDTQIKQSYLFRQLCERSDGTLRQCFESQQIACPSDLNITLNTDILNEADDNLNQYQLVLVEYATGDNSTVTKNDLNLISGQNENCTDENLEEDITLKSTLDLADEDHEAVQFLNEEFIEILQIQTNKQGAQEYVNICNDVLPAASEDLIVEDPAPTPTEEDIICDICNKIFGDKHKLSRHKKQHMAERPFECNFCDKSFVERGCLKKHLKRHRGEKPFGCGVCGMKFYDKSSLVSHTRIHTGDKPFVCQFENCGKAFTQSSQLETHKKIHSTEKANVCDICNKRFTLYNQLKIHKRIHTNEKPYECGFCGKNFSQSGNLTTHIRTHTGDRPFLCSFNACGRSFASVGELNSHLRTHTGQKIEKKLACHECGKMCRTRYELQNHLNSHAGVKPYICNVCDKSFLMSSHLVVHIRNHTGERPYQCDFCPKAFTTQQMVKAHMRIHTGEKKFACDICERRFTQASARNTHRKTHSRVWPKQKNVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054598;
- 90% Identity
- iTF_01054598;
- 80% Identity
- -