Nscu031657.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- -
- Assembly
- GCA_947095585.1
- Location
- OX352761.1:37248069-37249604[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.28 5.8e+03 -1.3 0.3 25 43 200 218 196 228 0.69 2 8 0.11 2.3e+03 -0.1 0.2 22 43 225 246 217 251 0.79 3 8 0.00087 18 6.7 0.2 21 51 252 281 245 282 0.85 4 8 0.0051 1.1e+02 4.2 0.1 21 49 307 335 286 338 0.84 5 8 0.0067 1.4e+02 3.9 0.1 21 44 335 358 333 368 0.84 6 8 8.6e-05 1.8 9.9 0.1 21 47 391 417 378 423 0.85 7 8 0.003 62 5.0 0.0 22 44 448 470 437 475 0.89 8 8 2.9e-06 0.059 14.7 0.2 21 53 475 507 471 508 0.91
Sequence Information
- Coding Sequence
- ATGGCAGGACACATTGAAGAGATACTGGATGGGAAATCTGCAGGTTTTATGGGATTTGCTAATGATGTTTCCTATTTTAACAAAAACGAAGATCACTACGTGTTTAAGCAATCTAATAATTTATCAGATCAAATTTTCCCATACATTAGGCAGATTGAAATTAAACAAGAGCCTGAATTTATTATTAAAGAATCTAATGATGAAGAGCGAAAAATTCAAGTTTTTTTAAAATCATCTAAAGTGTCTGATATTGATCGTATGCAATTAACCTGGTATAGCTGTGTTGTTTGTGATGAACGGTTTTTGTCGACAAAAGAGCTTGCACTGCATGTCCGGAATCATGCAATCTCAAATCCTTTGATGGCCGATAATGCTGGCCAAACATTTTCGTCAAAAACACTAAATAATCGACAAGCCCCAAAAACAGATTACACAGGATTTTCGAAAAAGGAACTCTTTGAAGATTACGTAAACATAAGTGTAGAACTTGATGGCAAACCAACCTATACGTGCAAACTGTGTCCTAATAAAAAATTTGCCCGACAAATTTCGATCACAAATCACATGAGAATTCATGAGAATCCAATACATAAGGAAAGAACTTGCCACATTTGTAATAGAATATTTTTGCGAAGAGATACGCTGTTAGTGCACCTGAGAACCCATAGTAACGAACGCAATTATAAATGCGAGGTTTGTAATGCGGCATTTAATCATTCCAGCTCTCTTGTATCACATAGGCGCATTCACACTGGGGAAAAACCCTACAATTGCGAGATATGTCAAAAGTCATTCCGTGAATCAGGACAACTAACCGCTCATAAAAAAACTCACTTCAGTAAGTTAATCAAGTGTCCAAAATGTGATAAAAAGTTCACTTCAAATAAAACGATGCGGTTACACTGTCGTACTCATACTGATGAGCGTCCATACGGATGTAATTACTGTGTAAAAATGTTTCGTAGCACAACCGCCCTTACAACTCATTTGCGGATACATACTGGAGAAAAGCCATATAAATGTGAAATTTGCTCCTATGCAACAAAACAATCTGGCTATATGGCCACACACATGCGGACACATACCGGTGAAAGACCTTTTAAATGCACCTTTTGTGACCGGGCCTATTCGGAGAAAAAAAGGCTTATTACACACACGCGAACCCACACTGGCGAGCGTCCGTACAAATGCCCGCTTTGTGAGGCTACATTTGCTCGCAATGATAATATGAAATATCATTTGAGAACCCACTCAGGTGAAAAACCATACAAGTGTGAAGATTGTGGTAAACAATTTGCACAGAATACAACACTGAAAATTCATCAAAAAATTCACACTGGTGACAAACCTTACACTTGCTCGCAGTGCGGAGTTAAATTTCGACAGTCTGGAACACTTGTTACTCATATGCTTCAACACAGTGATGAAAAACCGTACAAATGTGACTTGTGCGACAGAGCTTTCAGACAAAAGGCACATTTACGTCGCCATGTTGGAATAGATCATAATTCATCTCCATCAATTTTACTTGGTTAG
- Protein Sequence
- MAGHIEEILDGKSAGFMGFANDVSYFNKNEDHYVFKQSNNLSDQIFPYIRQIEIKQEPEFIIKESNDEERKIQVFLKSSKVSDIDRMQLTWYSCVVCDERFLSTKELALHVRNHAISNPLMADNAGQTFSSKTLNNRQAPKTDYTGFSKKELFEDYVNISVELDGKPTYTCKLCPNKKFARQISITNHMRIHENPIHKERTCHICNRIFLRRDTLLVHLRTHSNERNYKCEVCNAAFNHSSSLVSHRRIHTGEKPYNCEICQKSFRESGQLTAHKKTHFSKLIKCPKCDKKFTSNKTMRLHCRTHTDERPYGCNYCVKMFRSTTALTTHLRIHTGEKPYKCEICSYATKQSGYMATHMRTHTGERPFKCTFCDRAYSEKKRLITHTRTHTGERPYKCPLCEATFARNDNMKYHLRTHSGEKPYKCEDCGKQFAQNTTLKIHQKIHTGDKPYTCSQCGVKFRQSGTLVTHMLQHSDEKPYKCDLCDRAFRQKAHLRRHVGIDHNSSPSILLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01051349;
- 90% Identity
- iTF_01051349;
- 80% Identity
- iTF_01051349;