Nscu020982.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947095585.1
- Location
- OX352763.1:19863937-19875006[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-116 9.4e-112 374.3 28.5 1 299 189 483 189 484 0.91 2 2 0.033 1.4e+03 -0.5 4.0 210 246 503 538 486 557 0.57
Sequence Information
- Coding Sequence
- ATGTCTCAAATGTTGCAGCAATCAATTGCAAATGGTTCAGCAGCACCAAGTAACCTCGAAGCGAATAATAATCTGAAAACATCTCCTCCAATGGAGTATGACGAAATCGGTGAGGAATTTGATTTTAGTGAAAATGATTTGATCGAGCTGAACGGCGGAAGTGGTGATAAGAAAGAAACAAACGCCACTACTGGTATCAGTGACGCTGATGATGTAATCGACAATAACACAAGCGGACAAGTTCCCCCAGAAAAATTTCTCAAATTGAATGGCAACAGTGAACAATTAGTGATTGATGGTCACAGGCAGGAGCCACCATTAGCACCACCACCACCTACGAAAATAAATCGAACTGATGTAGATGATCCAGTAGCGACAACTCCATTCTGTCCAATTACGCCAAAGAAAATTGTCGACTGTGATGGGGATGAAAGAAACTTCCCAGCAGTGATAAATGGCAATGTCGTTGATGCCGCTGATGGACACGAGGAGGATGAATACTACAGCAATGATGAGCCCGAAGATGAGCTTATTGTTCAGTTTCTAGGACAATCCAATCAAATTGCTGAAGCTAGACTGGCAGCTAGGCGACAGGCACGTGCTGAAGCGCGTGAAATTCGTATGCGCGAACTGGAACGCCAACAGAAGGAGCAAGAACAAAATGCCGATCGTGTCTTCGATATGCATACAGCGGCGGGCATTGATCCACTATCACGTTCGCGTCTCACAGCCGGCGTTGGCGTTACTTCGGTCGGTGGTATTGTCAATTCGGTTCGGGCGAGTTCTATGTCGTCCCGGCGTAGCAGTGAAGATTCCCTGGAAGAGGAGGGACGCAGTTTACGTGATATTAGGCATGAGCTTAAGGATGTTGAAGAACGCTTTCGCAAAGCCATGATAGCCAATGCTCAGCTGGACAATGAGCGCGCCTCACAATCGTATCAAATTCAACTGCTCAAAGATAAACTGGAAGAAATGGAGGAATCATATGCACAGCTGCAGCGTGAATACAAAGAGAAGACACGCGACTACAATGCACTCAAGCGAAATCTGGAAAAACTCACCGAAGAGTTAAAGATCGTTCAGGGGCAGCTGAATGAACGCGATACGCTTATAACTGAACAGGGTTTAGTTATTGTTGCCGTCGAGAATGAGGATGGCTCAGATGCCAAGCGTGCTCTAGTCACTGTAGAGAATGCACAACTATTAGGTTCTGTACAGGGTTCTTTAGATGTCCGACTTAAGAAATTCATCGAAGAGAAGCAACAACTTCAGGGTGAAGTTCAAAACTTGCAAGAGCAATTAGAAAATTTCAAGACACAAGGACGAGGCCGTGGCAACTCAACGAATGGTCCGCTTGGGTCCGATGACGATTATGAAGCTCAGAGGGAAGCAAACAAAATCATCTCCGACTACAAATATAAATTACAAAAAGCCGAACAGGAAATCGCTAGTCTACAAGCCAGTTTGGCCAGATCGGAAACGCAAGTTATTCGATACAAGAGTACAGCGGAAGCAGCAGAGAAAGCCGAAGCCGAACTCAAAATCGAGAGGAGAAAATTGCAGAGAGAGAATCGCGAAGCAATGGAACAACTAGAAGAACTAGAAACATCAAATAATCACCTGCTAAAGAGATTAGACAAATTAAAGAATGCTAAGAGTGCTTTACTCAAAGATCTCTGA
- Protein Sequence
- MSQMLQQSIANGSAAPSNLEANNNLKTSPPMEYDEIGEEFDFSENDLIELNGGSGDKKETNATTGISDADDVIDNNTSGQVPPEKFLKLNGNSEQLVIDGHRQEPPLAPPPPTKINRTDVDDPVATTPFCPITPKKIVDCDGDERNFPAVINGNVVDAADGHEEDEYYSNDEPEDELIVQFLGQSNQIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTAAGIDPLSRSRLTAGVGVTSVGGIVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYAQLQREYKEKTRDYNALKRNLEKLTEELKIVQGQLNERDTLITEQGLVIVAVENEDGSDAKRALVTVENAQLLGSVQGSLDVRLKKFIEEKQQLQGEVQNLQEQLENFKTQGRGRGNSTNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEQLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -