Nign004585.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:11753632-11768509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.9e-05 0.0023 19.1 2.8 2 23 297 318 296 318 0.95 2 17 0.00026 0.021 16.1 0.4 1 23 324 346 324 346 0.95 3 17 0.0012 0.098 14.0 1.7 1 23 353 375 353 375 0.97 4 17 0.00013 0.011 17.0 1.3 1 23 381 403 381 403 0.99 5 17 0.00056 0.046 15.0 0.5 1 23 409 431 409 431 0.95 6 17 0.0035 0.28 12.5 0.6 1 23 438 460 438 460 0.97 7 17 0.02 1.6 10.1 3.6 1 23 466 488 466 488 0.97 8 17 1.4e-05 0.0011 20.0 1.6 1 23 494 516 494 516 0.95 9 17 0.00088 0.071 14.4 0.8 1 23 523 545 523 545 0.97 10 17 7.9e-05 0.0064 17.7 4.9 1 23 551 573 551 573 0.98 11 17 0.0022 0.18 13.1 0.8 1 23 583 605 583 605 0.95 12 17 0.0015 0.12 13.7 2.1 1 23 612 634 612 634 0.97 13 17 0.04 3.2 9.2 0.6 1 23 640 662 640 662 0.86 14 17 0.0023 0.18 13.1 1.5 1 23 668 690 668 690 0.94 15 17 0.0016 0.13 13.6 0.5 1 23 697 719 697 719 0.97 16 17 1e-05 0.00082 20.5 0.8 1 23 725 747 725 747 0.97 17 17 0.0043 0.35 12.2 0.8 1 19 753 771 753 773 0.96
Sequence Information
- Coding Sequence
- ATGTTATGCCTTAGTACTGTCACTGTAGTGATGATTTTCGCGAACTTCACTGCACTGATGAGTTTATGTAGAACATGTTTATCGCAACATAACAACGCTTCTGACATATTTAGTGGAAAGTGTTTCAATGAAAAAACGTTCAGTGAAATCTTAATGGACTGTGCTTCGATACAAgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGCGTATTTGAAGACGTTCGTTGTTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTTCTTCGATATTCGTACTTCGACATAGAAGTAAAAAAGGAACCTGAGGACAAGATAACAGTAATCGAAAAAGAATGTAGTTTTTCCATGccggaaaaaaattcttttcgtAAATTTTTACGAACCGATATCGATTCGTGCACAAAAAACGTCGATGAACCGAATATAGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGAGAGAACGCAGTCATGTTTTACTACATCTTACGAGAGAGGATCGGATGAAAATCTCAGAACGTATCTTTCGTTACAAGAATTTATTGATATCAAAGAGGACAACGAGAATTTTGTCGACGATGAGAACACGACGTCGGAAGTACCGATCGACGCAAGAAAGACACGCGCGACGGATTCGGACAACAACGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGATCACTTGTGACTCGAATAGTGGGTCGTTGGAGACGAAGACACATCTCGACGTACATTTGAAAATACACTGCGAAGGAAAAGAAGATCTCTGTGCGACGAAGTCGCGCCGTCGACGAGCGACTAAGAACGTCGATGTTTTCGGTGGATCAATTCCATGCGATCAATGCAAAATGTCGTTCTCGACGAAACATCAGTTACGCAAGCACATGTACCTCCATACCGGCGAGAAGCCGTTCAAGTGCGACACGTGCGGCATGtcgttcattaataaaattggattaaaccaacactcctacgtgcattccaaaaaaaagaaaccgttTGCGTGTAATCTGTGCACGAAATCGTTCTTTAGCCCCGGGCATTTGGATGGGCATAGGAACCGACACCTCAGCAAAAAACCGTTCAAGTGTAACGAATGCGAAAAATCGTTTTTGTCCAACAAGTATCTGATCGCCCATAAGAGAGTTCACTCGGGTGAAAACCTGTTCAAGTGCGACACGTGCGACATGtcgttcattaataaaattggattaaaccaacactcctacgtgcattccaaaaaaaagaaaccgttTGCGTGCGATCTGTGCACGAGATCGTTCTTTAGCCTCGGGACTTTGGAAGGGCACAGGAATCGGCACCTTGACAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtgTAACTCAATTCTGGTCCggcataaaaaaattcacacgGGTGAAAACCTGTTCAAGTGCGACACATGCGGAAAGTCGTTCcctaataaatatagtttagaCCGACACTCCTTcgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCTCGAAATCGTTCTTTGACCCTGGGTGTCTGCTTGACCACAGGAATGTGCACCTCGGCAAAAAACCGTTTAAGTGCAACGAATGCGAAAAGTTGTTTTCGACCAAAAGACATCTTAGAGACCATAAGAAAGTTCACAAGAGAGTTCACACGGGTAAAAACCTGTTCAAGTGCGACACGTGCGGTATGTCGTTTGCTCTGAAAAATACACTAGACCGACACTCCTACAtacattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCTTCAGCACCGGGCATTTAGACGCGCATAGGAACCGGCACCTTGTCAAAAAACCGTTCGAGTGcaacgaatgcgaaaagtcgttttcgtgGAACAAAATTCTGGTCCagcataaaaaaattcacacgGGTGAAAACCTGTTCAAGTGCAACACGTGCGACATGTCGTTCGTTACTAAAACTAAATTAGACCTCCACTCTTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGACCTGTGCACGAAATCGTTCTTCACCGCCGAGCGTCTGATCTCGCACAAGAACGTCCACCTCGGCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgAGCAACACACTTCTGGTCCAGCATAAGATAGTTCACACGGGTAAAAACCTGTTCAAGTGCGACACGTGCGATATGTCGTTCgctaataaaactaaattagatCAACACTCCTATCACCGGGTGTCTGGTCGCGCACAGGAACCGGCACCTTGGCAAAAAACCATTCAAGTTCAACGATTGCGAAAAGTCGTATTTGGGCATCGAGGATCTCCTGAGACACAAGAAGGTGCACATGGGCGAAAAAACGGTTTGTGCGATGCCGCGTTTAAACTGAGAGTGTATTTGCGTGTCGCCACTGAACGCGACTGCTCACCAAAAATGCACACATTGTACAAATTAGTTATTACTTATTTCATCActgctattattattattactgctATGCATAAATTAGTTCGCGACGCCGCCGGTTATAGCCGGCGTCCGTTTCTGCGACTTACATCGTGGATGCCGACTATAGCCGGTGTTAGGCTCCAGGGGTCGCTTTGTGGCCGCCAGTTCAAACGCTGTGTCGAGAAGAAGGAATTAATAAACAAGCAAGCTACGATAGTTTGTGTATCGTCGTCTTTAGCTATCtcgatttTACAAGATAGGCAGACGAAAAGGTTCGCTTATCTGACGATAAAGACGAAAACCGAGCTCTTTCTCTATCTCGACCGAGCGGCGCGAACCTTAAGTTGCGGCCTCGGACAACCAGATTACTATTTATAG
- Protein Sequence
- MLCLSTVTVVMIFANFTALMSLCRTCLSQHNNASDIFSGKCFNEKTFSEILMDCASIQVCKNERLSSFICHSCAAYLKTFVVFRNKCIETESALCDFLRYSYFDIEVKKEPEDKITVIEKECSFSMPEKNSFRKFLRTDIDSCTKNVDEPNIVKVKTEVDDEETNDERTQSCFTTSYERGSDENLRTYLSLQEFIDIKEDNENFVDDENTTSEVPIDARKTRATDSDNNEDRSLESRRIRSGHDSITCDSNSGSLETKTHLDVHLKIHCEGKEDLCATKSRRRRATKNVDVFGGSIPCDQCKMSFSTKHQLRKHMYLHTGEKPFKCDTCGMSFINKIGLNQHSYVHSKKKKPFACNLCTKSFFSPGHLDGHRNRHLSKKPFKCNECEKSFLSNKYLIAHKRVHSGENLFKCDTCDMSFINKIGLNQHSYVHSKKKKPFACDLCTRSFFSLGTLEGHRNRHLDKKPFKCNECEKSFSCNSILVRHKKIHTGENLFKCDTCGKSFPNKYSLDRHSFVHSKKKKPFACDLCSKSFFDPGCLLDHRNVHLGKKPFKCNECEKLFSTKRHLRDHKKVHKRVHTGKNLFKCDTCGMSFALKNTLDRHSYIHSKKKKPFACDLCTKSFFSTGHLDAHRNRHLVKKPFECNECEKSFSWNKILVQHKKIHTGENLFKCNTCDMSFVTKTKLDLHSYVHSKKKKPFACDLCTKSFFTAERLISHKNVHLGKKPFKCNECEKSFSSNTLLVQHKIVHTGKNLFKCDTCDMSFANKTKLDQHSYHRVSGRAQEPAPWQKTIQVQRLRKVVFGHRGSPETQEGAHGRKNGLCDAAFKLRVYLRVATERDCSPKMHTLYKLVITYFITAIIIITAMHKLVRDAAGYSRRPFLRLTSWMPTIAGVRLQGSLCGRQFKRCVEKKELINKQATIVCVSSSLAISILQDRQTKRFAYLTIKTKTELFLYLDRAARTLSCGLGQPDYYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01050551;
- 90% Identity
- -
- 80% Identity
- -