Nign020912.2
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092094.1:7346128-7348860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.7e-05 0.003 18.7 1.7 3 23 146 166 145 166 0.98 2 16 2.6e-05 0.0021 19.2 4.9 1 23 172 194 172 194 0.97 3 16 0.00018 0.015 16.5 4.2 1 23 200 222 200 222 0.97 4 16 9.7e-05 0.0078 17.4 0.5 1 21 228 248 228 249 0.94 5 16 8e-07 6.5e-05 24.0 0.1 1 23 256 278 256 278 0.98 6 16 2.7e-05 0.0022 19.2 0.0 1 23 432 454 432 454 0.98 7 16 0.00018 0.014 16.6 8.1 1 23 460 482 460 482 0.97 8 16 0.00023 0.019 16.2 6.5 1 23 488 510 488 510 0.98 9 16 0.065 5.3 8.5 0.6 1 22 516 537 516 539 0.90 10 16 0.009 0.73 11.2 5.0 1 23 551 573 551 573 0.97 11 16 0.00051 0.041 15.1 6.6 1 23 579 601 579 601 0.97 12 16 2.5e-06 0.0002 22.4 0.5 1 23 608 630 608 630 0.96 13 16 3.2e-06 0.00026 22.1 1.2 1 23 636 658 636 658 0.98 14 16 3.5e-06 0.00028 22.0 0.7 3 23 666 686 664 686 0.96 15 16 2.3e-05 0.0019 19.4 0.1 1 23 692 714 692 714 0.99 16 16 0.62 50 5.4 1.1 1 23 719 742 719 742 0.96
Sequence Information
- Coding Sequence
- atggatactgttgaatataattttgataaaatttgtaGAGCATGTAAGGGCGAGGCCGAAGAACTGTTTTCCGTATTTGAAACAGAAAAAACATCTGGTCGACCATCTAAACTTGCAGATATGTTAATGGCATGTGCATCGGTACAGGTGGAGCATGGAGATGGTTTACCAGGTTCTATGTGTACACAGTGTGTTGATCAATTAAGTAATGCCTATACATTTAAAAAGCAGTGCGAGAGTACTGACACAAATTTACGTTTATATGTTCGTCAAAAAGACGGAATTAAAGAAGAGAACGCtgtaaataatactgaaattgataatattttagattttaattccatttataaTAACGAAGTGTCCACCATAAATgattcaaaaacaataaaaacagaACCTACAGATATTCCTTATGATGAAGATCGTTCAGTATTGTGTAATGtatgtaacaaaaaattttCATCTACAGATGAACTAAAATTACATCAACAAAAACATGTCGGAACAAATgttcataaatgtaaaatatgttcaaaagaATATTCTAGATTAGGTCATTTACAGAGACATATGGTGAAACATGAACCTCGACGTGTACATGTATGCActctttgtaataaaactttaacaAAAGTAGAACATTTAAAACGTCATATGATAACCCATGTAAAAAATAAGCCTTACGTATGTGAAACTTGTAAACGTGGTTTTAATCGACCAGATCATTTAATGAATCATGCAAAAAGGTGTAAAGGGGATAAACCCTACGTTTGTGAAATTTGTAACAAAGGATTTAGTCGTGAAGATAGTTTACAAGTTCACCTTGCTACTCATGTTGCAAAAGTCGATATGAAACCAATGCTTGATTCACTTGATAATTACGAAGAACATTATGAAgtagttgaaaattatgtagGGGTATCAGATTTAGAAGAACCAGATAATGGTTCTGATTCTGATGTAATATCCAACATAGATTGGGCAGAACCAGAGGTGAATATAGTAGAGAAAACAGAATGTGAATCAAACATAACAACACTTAGTCAAAATGTCAAGTATGAAGAacatttacaagaaaataatgctaaaaataatgattctaaAAGTAAAGAATCTGATGAAGAATCAAAACCTTTACTAGAAAGAATAAAACCAAAAGTGTCTGATGTTAGTGAAGTTCCTGTTAAAAGAAAAAGAGGTCGTCCAAGAAAAACAGATATTACACCCTTTAAGACTATTAAATCAGAAGAAAATGGACAAGAAAATTTAACATTACTCgaaaataaagcaaaatatcCTTGTGATGTTTGTGATAAGGTATTATCTACATTGATAGGACTTGAAATACATATGCGAAAACACAccggattaaaattatttcattgtaaagtatgcaataaaaaatttaccCGTTCAAATCATATGAAACGGCACTTGCTGAGTCATGATGAATATAAACCATTTACTTGCGATGtttgtcaaaaaaaattcaCCAGGCATGAGCATTTAGTCAAACATTCAAAAAGCCATGCTTCTGAAAAGAAATTTGAATGTGAAGTATGCTTTAGACTTTTTGGACGAATAGAGCAACTTGAGAAACACAAAgcttttaaacataatattggTGAAAAAATGCCAActgagaaaaaatacaaatgtacagTATGCAATAAGCATTTTACAACTGAGAAATATCGAGATACACATCAAAAAGCTCACAGTGGAGAAAGGACATTTGAGTGtaaaacttgtttaaaaaaatttaaatcaaaatctcATTTAACTGAACATActaaatttcataatgaatgtTCCAAAAAATTCTTGTGTTCAGAATGTGGACAGAGATTCATAAGAAATGATTATCTAGTTATTCATATGAGAAGACACAGAGGAGAAAAACCATTTAAGTGTAAATATTGTGGAAAAGgtTTTCCTCGTACAACAGATTTAACAGTGCATGAACGTTACCATACCGGTGAAAAAACTCATCTTTGTATGGTATGTGGACGTGGATTTGGAAGagCTTATAATTTAACCGTTCACATGCGAACTCATACCGGAGAAAAACCATATCAGTGTACATATTGTGATGCTGCTTTTGCCCAAGGAAATGATTTAAAAGCTCATGTTAGAAGGCATACTGGTGAAAGATATCATTGTGATTTATGCAGTGAAGCATTTCTTATGGGGTATCTGTTAACTCAACATAAACGAACCGTCCATGGAGTTGATGTGAAATCTCACATTCGAAGATTACATCCATCAGAAAGAGTTCATCTACCCAATTCACAACATAATACACAACCAAATATCAAACCAATTCCAATAGCACAGttacaaatattacataatacaaCTACATTACAGTCACAGCCTGAAGTTCAGGATGAACTGCAATCACAAATTTCATTACCTACCCCACCAATATTACCAACAATATCACATTCTGTCTCTGATGCTGTTGCATAG
- Protein Sequence
- MDTVEYNFDKICRACKGEAEELFSVFETEKTSGRPSKLADMLMACASVQVEHGDGLPGSMCTQCVDQLSNAYTFKKQCESTDTNLRLYVRQKDGIKEENAVNNTEIDNILDFNSIYNNEVSTINDSKTIKTEPTDIPYDEDRSVLCNVCNKKFSSTDELKLHQQKHVGTNVHKCKICSKEYSRLGHLQRHMVKHEPRRVHVCTLCNKTLTKVEHLKRHMITHVKNKPYVCETCKRGFNRPDHLMNHAKRCKGDKPYVCEICNKGFSREDSLQVHLATHVAKVDMKPMLDSLDNYEEHYEVVENYVGVSDLEEPDNGSDSDVISNIDWAEPEVNIVEKTECESNITTLSQNVKYEEHLQENNAKNNDSKSKESDEESKPLLERIKPKVSDVSEVPVKRKRGRPRKTDITPFKTIKSEENGQENLTLLENKAKYPCDVCDKVLSTLIGLEIHMRKHTGLKLFHCKVCNKKFTRSNHMKRHLLSHDEYKPFTCDVCQKKFTRHEHLVKHSKSHASEKKFECEVCFRLFGRIEQLEKHKAFKHNIGEKMPTEKKYKCTVCNKHFTTEKYRDTHQKAHSGERTFECKTCLKKFKSKSHLTEHTKFHNECSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCMVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERYHCDLCSEAFLMGYLLTQHKRTVHGVDVKSHIRRLHPSERVHLPNSQHNTQPNIKPIPIAQLQILHNTTTLQSQPEVQDELQSQISLPTPPILPTISHSVSDAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004824;
- 90% Identity
- iTF_00004824;
- 80% Identity
- -