Nign011405.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029203775.1
- Location
- CP092090.1:19848061-19870475[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-107 9.2e-103 344.5 27.3 1 299 32 351 32 352 0.88 2 2 0.0037 1.2e+02 2.6 4.1 190 238 379 426 353 427 0.69
Sequence Information
- Coding Sequence
- ATGGACAACACCACGGCGGTAGCTGGTGGTCGCAGACGCACCGTTACTAAATCTTCTGCAGAGGATCAAGCTCTTGACCAAATAGCTAAAGAGGCTGAAGCTCGTCTTGCAGCTAGACGGCAAGCTCGTGCAGAAGCTAGAGAAATTCGTATGCGGGAACTTGAAAAACAGCAGCGAGAGCAAGAGGAAAATGCTGATCGAGTATATGACATGTATActgATCCAGTAACTCGTAGTACTGCGGCTATAAGGACTGGAAGTGGTGTTTCTGGTCGAGCAAGTATGTTATCCAATAGCAGTTATCATTCTAGCCGTAGGAGTTCAGAAGATTCTCTTGAAGATACAGGAAGTTTAAGAGATCTTAGAcTTGAAATACGTGAATTAGAAGAAAAGTTTAGAAAAGCTATGATTACAAATGCACAACTGGATAATGATAAAGCTTCATTTACATATCAAATTGAGTTGCTTAAAGATCGTTTGGAGGAATTAGAACAAGATCATTCACAGTTACAAAGAGAATATCGTGATAAATGCCGAGAATATGAACAACTAAAACGTGCTGCTGGtaaattaaaagaTGATTTTACATGTATGAAAACATTACTTGAAGAAAGGGATACACTTATTTTAGAAGCAGGATTAGTCATTGTTCAATGTGATGATGACGATATTATAGATGAAGATGAAAATGGAGGAGGAGATAATAACACAAATCATAGATCTAAAAAAGTACTTGTTAGTGTTGAAAGTGCTGAAGTTTTACAGCGTGCTGGTGAAGGAAATCTTGatgtaCGACTTAAAAAATTTTCTgaagaaaaaaaagatttagaaGATCAAATTCGTTCTTTAAGACTGGAATTAGATGAAGAAAAACATAAACTACGAAAAAATAGGCCTAATAGTAATGTATCAGTTAATACCAATTCAGTTTTAATGAATGGTCCAGATCCAGAAATAATAGATAATGTTGATGTCCTCGATATAAAAAGAGAAACAACCAAACAGTTggatgattataaatttaaattacaaaaagctGAACAGGATATATCTTCTTTACAAGCAACTGTAGCACGCCTTGAAAGTCAAGTTATAAGATACAAAGCAGCAGCAGAGGCATCCGAAAAAGCTGAAGATGAGTTAAaagtagaaaaaagaaaattgcaaAGAGAGgcTCGAGAATCACAAAGTAGGGTAGAAGAACTTGAAACTGCAAACAGTCATTTACAGAAGCGTTTGGATAAACTTAAAAATGCAAAATCTGCTTTATTGAAAGAACTttga
- Protein Sequence
- MDNTTAVAGGRRRTVTKSSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELEKQQREQEENADRVYDMYTDPVTRSTAAIRTGSGVSGRASMLSNSSYHSSRRSSEDSLEDTGSLRDLRLEIRELEEKFRKAMITNAQLDNDKASFTYQIELLKDRLEELEQDHSQLQREYRDKCREYEQLKRAAGKLKDDFTCMKTLLEERDTLILEAGLVIVQCDDDDIIDEDENGGGDNNTNHRSKKVLVSVESAEVLQRAGEGNLDVRLKKFSEEKKDLEDQIRSLRLELDEEKHKLRKNRPNSNVSVNTNSVLMNGPDPEIIDNVDVLDIKRETTKQLDDYKFKLQKAEQDISSLQATVARLESQVIRYKAAAEASEKAEDELKVEKRKLQREARESQSRVEELETANSHLQKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004665;
- 90% Identity
- iTF_00004665;
- 80% Identity
- -