Nign008064.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092089.1:17594295-17599163[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-12 1e-08 35.6 0.0 2 39 346 384 345 388 0.90 2 4 2.1e-13 1.1e-09 38.6 0.2 1 39 399 437 399 440 0.95 3 4 1.1e-18 6.2e-15 55.5 0.0 1 45 454 499 454 499 0.97 4 4 4.8e-20 2.6e-16 59.9 0.0 1 43 506 549 506 551 0.96
Sequence Information
- Coding Sequence
- ATGATGACGGCGAGGTACGGGTTCAAGGCCAGTCACGCTTGTCGTGAGTCTCTTCTGAAAACAGCAgatcagttaaaaataaaaggtTTATGTGATCTCCCTGGAGAAAGTGAAAATGATCGTAATACAccaaataattcttattattcattaaatgatGAATCACCAGTAGTACCTACTGGAATACGAAaatcatattcaaaaatttgtCGTTTACCTGGATCATCTACAAAACGAAGTCATAGAAATATATCTGACATTCCTGCAAAGAAGTATTTTAGAGAAACACCAATAAACAGGGATATATATAcTGAAAAGGCTGATCgtgtaataaaaacagaaaaaccaAGCTATAATTCTTTAGAAACAGGTGAAGAAAATGAAGATCTAAATATGCCAGTTGTATTGTTAGAATCAAAAGGCAAAATTTCAGAAGAAAGAGACGTTTGGTCTCCGTCTGGTACAAGTGACAATCATCCTGTCAATATGACAGGCCATGGTTTGATTCCAGCTCAGaatcttTTTCCGGGCCATGTTGAACTTCCACCGGAACCTCCAGCACCTGCAGCAACACCAGTACCATGCTCACCACAAGAATTAATGCAATCTTCACATTTATCACATTGTAGTCCAACAACACATCATGATCTTAGtgaatCAAATATGTCAACTGGAAGCTGTGCAGGTGGTATGGGAAgtgataatgatattaaaattaaatttgaaacccTAAGATCAGTTGAATCAATGGATGCTTGTAGTCGTGCTAGTAGTCAAGCATCTGGACTAGATAATGGAGAAGAGCATCCAATCAGCTCTCATTCAATGCATATGATGATTACACCTGAATTATTAGGACTTATTCCTAGTGGCTCAGatattggTGATGATCCTTTGGGATCGAATGGTATAAAAAGTTCAAATGGTCATAGTTCATCTGATAATCTTTCTAGAAGTCATATGAATAATGGAATATTAGGAAATTTATCTAGTTCAGGAGGTACTGGTCATGGAGGTGGTCCAAAAACTTGGAGTCAGGAAGATATGGAACTTGCATTAGATGCTCTTCGGAATCATAATATGAGTTTaacaaaagcATCTGCAACATATGGAATTCCATCTACAACACTATGGCAAAGAGCACATAGACTTGGTATAGATACACCTAAAAAAGAAGGACCTACAAAATCTTGGACAGAAGAAAGTTTAAATTCTGCTCTAGAAGCATTAAGAACTGGTACTATATCAGCAAATAAAGCAAGTAAAGCATATGGTATACCTAGTagcacattatataaaatagctaGACGTGAAGGAATAAGATTAGCTGCACCATTTAATGCTGCTCCTACAACATGGTCTCCTGAGGATTTGGAACGAGCACTAGAATCTATTAGAACTGGACAGACATCTGTACAAAAAGCTTCTGCAGAATTTGGAATACCAACAGGTACACTTTACGGTCGATGCAAGAGAGAAGGAATAGAACTTTCTCGATCAAATCCTACGCCATGGTCTGAAGATGCAATGGGTGAAGCTTTGGAAGCAGTAAGggTTGGACAAATGTCTATTAATCAGGCTGCAATCCACTACAATCTTCCGTATTCATCTTTGTATGGACGTTTCAAACGTGGGAAATATGACACAGATACATCAAGTGGCAATATTGACACACATTCATCAAATGATCAAAATAGTTCTAGTGCAATCCAAGACCATTCTATGTCACAGTATCCAAATACAAGTAGTTCAAATCAAAGTCATACACATGTCCATAATATGTCATCATCACAGTCCCATAATATGCCAGGATCACATTTAAATATGACAAATAATCAATATCAGCATCAAAACATCAGTTGA
- Protein Sequence
- MMTARYGFKASHACRESLLKTADQLKIKGLCDLPGESENDRNTPNNSYYSLNDESPVVPTGIRKSYSKICRLPGSSTKRSHRNISDIPAKKYFRETPINRDIYTEKADRVIKTEKPSYNSLETGEENEDLNMPVVLLESKGKISEERDVWSPSGTSDNHPVNMTGHGLIPAQNLFPGHVELPPEPPAPAATPVPCSPQELMQSSHLSHCSPTTHHDLSESNMSTGSCAGGMGSDNDIKIKFETLRSVESMDACSRASSQASGLDNGEEHPISSHSMHMMITPELLGLIPSGSDIGDDPLGSNGIKSSNGHSSSDNLSRSHMNNGILGNLSSSGGTGHGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALESIRTGQTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTDTSSGNIDTHSSNDQNSSSAIQDHSMSQYPNTSSSNQSHTHVHNMSSSQSHNMPGSHLNMTNNQYQHQNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004586;
- 90% Identity
- -
- 80% Identity
- -