Ncya001318.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoitamus cyanurus
Gene Symbol
-
Assembly
GCA_947538895.1
Location
OX384547.1:16452034-16454454[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 6.5e-06 0.00096 20.3 0.7 2 23 192 213 191 213 0.97
2 12 1.6e-05 0.0024 19.0 0.5 1 23 220 242 220 242 0.96
3 12 1e-05 0.0015 19.7 1.6 1 23 259 281 259 281 0.99
4 12 3e-06 0.00044 21.4 1.1 1 23 290 312 290 312 0.99
5 12 2.7e-05 0.004 18.4 0.3 1 23 318 340 318 340 0.97
6 12 1.6e-06 0.00024 22.2 3.4 1 23 346 368 346 368 0.98
7 12 4.7e-06 0.00069 20.8 0.5 1 23 374 396 374 396 0.95
8 12 0.00026 0.038 15.3 1.1 1 23 402 424 402 424 0.99
9 12 9e-06 0.0013 19.9 0.2 1 23 430 452 430 452 0.98
10 12 4.5e-07 6.6e-05 24.0 2.7 1 23 458 480 458 480 0.99
11 12 1e-06 0.00015 22.8 0.3 1 23 486 508 486 508 0.97
12 12 3.9e-05 0.0057 17.9 0.5 1 23 514 536 514 536 0.98

Sequence Information

Coding Sequence
ATGCAGACGAATAATCCACAACGAAGTCCGAATATCTGCAGAGCTTGTATGTCGAGCGATAATTTTCTCCATGAAATCTACGAGTTGGGAGTGAACTCCATACAAATCTTGACCATGTTTGTGAGCACCACGATGGTCAGTATAGAGCCCGATGATGCGCTGCCCAAACAAATTTGTGCATTTTGCTTGAATTCTCTCGTAAGCGCCTATCAGTTTCAACAAAAGTGTATGGACTCTGATATGAAGCTAAGGGCTAGACTACCTGTTGCACCGGAAAGAGGGGACGATCAAGTGCAAGAAACACTACTGCCCATTGTGCTTGATTTTGTTAATGTGCCCAAACAGGAAGCACAACCAATTCTTGATAAAGGAGATACTGCAATAAGCTGTAGAGAACATCCCTCTTCTGAGCCTCTGAAAGAAATTATCAAAGAGGAGGATATACTCGAAATTGAGAAGCCTTATGGGGAGCCAAAAACCAAGCATGATATAGTTGAGGAGGGGGACGAAAGTTTATCTGAAGACAATGAGGAAAATAAGAACACCGATGAGATTTCACTGAGTAATTCCTTGGAATGCCCAGTGTGTCTTAAAACCTTCGACAGGAAATACCGGCTTAAGCGGCACCTCAATGTACACAACGAGGTGGGAAAGCCTTTCGAGTGTGAAGTATGTAAGCAGCGATTCTCTTCTGGGAGCAATTTAACGCGTCACTCAATTGTCCACAGCGAAAAGCTTTCCGAGATGTCGGAGACCATAAATCGCCCGGAAGACTTCAAATGCACGGAGTGCTCAAAGGTTTTCTGGAAGCAGGAATCTCTGTCGTCCCACATGCGAACGCACAAAGATGCAACAAAAAGTAAAGAGTATCGCTGTGAGTTTTGCCCAAAGGTCTATTCCCGATTGAATCTGTTGACCAGGCATGTTAAATCCCATAAGGAAATGAGACAGCATATGTGCAAAATTTGTGGAAAAACATTCGCTTTGGGTGCTCAGTTGATCGATCATATTAACAGGCATAATGGGATAAAACCTCATGTATGCCCCATTTGCGATAAAGGTTTCCAGCAATCCTGCACGCTAAAGGACCATATGCGTACCCACAGTGGCGAACAGCCGTTCCTTTGTTTCGAATGCGGGAAAGCTTTCAACAATGGCAGCAATCTTCGGCAGCATCTGATACGACACACCGGAGTTAAACCATTCCAATGCCCCGAGTGTCCTAGTCGTTTTACGTGCAAAGGTGGACTCAAATCACACATGGCAACTCATTCCACCGTCAAGCCATATATCTGCGATATGTGTGGGTCGGCATTTACGAAACCTTACTCATTGGCAAAACACAAGCGCATCCACACCGGAGAGCGACCATACTCCTGCGACGTGTGCGATATGAGGTTTAACTCGTCCGATCATGTGAAACGACACATGAGAACACACACTGGCGAGAAACCGTATGCCTGCAAATTCTGCGATCGCGCATTTGCCCAGAGCAACGATTTAGTAAAACACATGCGAGCTCATGTTGGCGAAAACACATATCAATGCCACGAATGTGCAGCTGCTTTTCGATTGAACTCAGAACTTAAAGTGCATATCCAGCAACACTTTAAACAGCAAAAGGTGACAGAGTCATCCGATACGAATTCGAACTCCCAGGATAGTTTGGTGACTACAACGGGAGTTTCAATGCAAGCTTTAAACAAAATTATCTGA
Protein Sequence
MQTNNPQRSPNICRACMSSDNFLHEIYELGVNSIQILTMFVSTTMVSIEPDDALPKQICAFCLNSLVSAYQFQQKCMDSDMKLRARLPVAPERGDDQVQETLLPIVLDFVNVPKQEAQPILDKGDTAISCREHPSSEPLKEIIKEEDILEIEKPYGEPKTKHDIVEEGDESLSEDNEENKNTDEISLSNSLECPVCLKTFDRKYRLKRHLNVHNEVGKPFECEVCKQRFSSGSNLTRHSIVHSEKLSEMSETINRPEDFKCTECSKVFWKQESLSSHMRTHKDATKSKEYRCEFCPKVYSRLNLLTRHVKSHKEMRQHMCKICGKTFALGAQLIDHINRHNGIKPHVCPICDKGFQQSCTLKDHMRTHSGEQPFLCFECGKAFNNGSNLRQHLIRHTGVKPFQCPECPSRFTCKGGLKSHMATHSTVKPYICDMCGSAFTKPYSLAKHKRIHTGERPYSCDVCDMRFNSSDHVKRHMRTHTGEKPYACKFCDRAFAQSNDLVKHMRAHVGENTYQCHECAAAFRLNSELKVHIQQHFKQQKVTESSDTNSNSQDSLVTTTGVSMQALNKII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00628550; iTF_00717961; iTF_00937474; iTF_00936743; iTF_01461333; iTF_01183986;
90% Identity
-
80% Identity
-