Ncya000155.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384547.1:1866225-1873846[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.54 8.9e+03 -3.5 0.5 69 86 11 28 6 42 0.45 2 3 2.6e-10 4.3e-06 27.1 0.4 271 299 165 193 133 194 0.75 3 3 0.012 2e+02 1.9 4.4 209 247 212 249 196 268 0.62
Sequence Information
- Coding Sequence
- ATGGCGCCAGCACCTAGAGTTAACAAGTCTAAACAGTTGAGTGCAGACAAGTTTAAGGCGGTGGACACAAAATCGAAAAGGCAAAAACTTAGATCGATACAAAAGAAAGGCAATAAACGATCAGAGGTTCCGGGCGAAAATCTTTTGCTAAACTATACATATCATCTGGATCATTACCATAATCAGAAGGTCGTCCTCGGATTTGATACGACCTCTTTTGAGGCAAAGATAGTCTTCCACCGCCATGGTCTCGCTCCTGTGTCAACATTTTACTCTGGATGGCTGGAAGTTTACAAACATCTATCCAAACTAAAAGACGAGGTTATTCCAGACATGTTCCCGCCAAACCAAGAAGTGCTTCAGACGATATACACAATCCCCGTTGGTACAGGAACTATTCAGCTGACCCTTGACGAGCTCTATAAACTGTCTGATATGCAGGATTTCTTCAAGATTGTTATGTTCCACAATAACAATGCCGCCGAAAGTGTGAAGGAGTACTATAAACAATATTGGGAGGCTAATAAACTTATAGCCGATTATAAATATAGGCTTCAAAAAGCGGAACAAGAAATAGCTAGTCTACAAGCTAGTTTAGCAAGGTCTGAAACACAAGTTATAAGATATAAAAGTACCGCAGAGGCTGCTGAAAAGGCGGAGGCTGAACTAAAAATAGAGCGAAGGAAACTACAACGGGAGAATCGGGAATTAATGGAACGTTTGGAGGAACTAGAGACAACCAATAATCACCTATTGAAACGTTTAGATAAACTAAAAAATGCGAAGAGCGCACTACTCAAAGACCTCTGA
- Protein Sequence
- MAPAPRVNKSKQLSADKFKAVDTKSKRQKLRSIQKKGNKRSEVPGENLLLNYTYHLDHYHNQKVVLGFDTTSFEAKIVFHRHGLAPVSTFYSGWLEVYKHLSKLKDEVIPDMFPPNQEVLQTIYTIPVGTGTIQLTLDELYKLSDMQDFFKIVMFHNNNAAESVKEYYKQYWEANKLIADYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRELMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -