Ncya000160.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947538895.1
- Location
- OX384547.1:1885664-1891108[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.25 4.1e+03 -2.4 0.0 50 80 46 76 26 82 0.61 2 2 7.8e-98 1.3e-93 314.5 30.1 1 260 91 341 91 359 0.91
Sequence Information
- Coding Sequence
- ATGGCACAACAAATTGAAAATATTGTTATTCAAAAACTTAAAACAGATAATACTGAAAGTGTTCCTGCGCCCTTGAATAAAAGTGATGACGAAGAAGAAATTTATTTTAGCGATAGTGATTTTAAAGATTGTGAAAGTCATAACGCTCTTACAGGACAGGACACTTATATGAAATATGGTGGAATTTTATCAAGAAATCATAGTGTAGACAATGATAGTGAAAATGAGGGTGAATTCATTGTTGACTTTCTTGGAAAAGAAAGTAACGTTGCGGAGGCTAGATTGGCTGCACGGCGCCAGGCGCGCGCAGAAGCGCGTGAAATACGAATGCGTGAACTAGAACGCCAACAAAAAGAGCAAGAACAAAATGCTGATCGAGTGTTTGACATGCAAACAGTGGCTGGGCTTGACTCCTTATCTAGATCTCGGCTAAACATGTCAGGAAACTCCTGTAGGGGTACTTCAATGTCCTCAAGGCGAAGCAGTGAGGATTCCCTCGAAGAAGAAAGCCGCAGTTTACGTGATATTAGGCATGAGCTTAAGGATGTTGAAGAACGATTTAGGAAAGCAATGATAGCAAATGCACAATTAGACAATGAAAGAGCCTCACAGTCGTATCAAATCCAATTGCTAAAAGACAAATTAGAGGAAATGGAAGAGTCATTTGCGCAACTCGAGAGAGAGTATAAGGAAAAATGTCGTGATCATAACGCTTTAAAGAGAAATTATGATAAATTAGAAGAAGATTTAAAACTAGTTCGGGGGCAATTAGACGAAAGAGATACTCTTATAGCTGAGCAGGGTTTAGTTATAGTTCTAGTAGAAAATCAAGATGGCTCAGATGCCAGGCGCGCTCTAGTCAGTATGGAGAACGCACAGCTATTAGGTTCTGTTCAAGGCTCTTTAGATGTGCGGCTTAAAAAATTCACGGAAGAAAAGCAACAACTACAAAAAGAAGTCCAAACTCTTCTTCACCAATTAAGTGACGTTAAATCTCAAGGTCGACGGGGAGGATCTCTTAACGGCCCTCTAGGAGCCGAAGATGACTATGAAGCTCAAAAGGAGGAATTTGGGGAGATGCTGCAAGCATTTGTTGGATATGACGGAAAGGCTACAAACAAAATTTTAACGCAATAG
- Protein Sequence
- MAQQIENIVIQKLKTDNTESVPAPLNKSDDEEEIYFSDSDFKDCESHNALTGQDTYMKYGGILSRNHSVDNDSENEGEFIVDFLGKESNVAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTVAGLDSLSRSRLNMSGNSCRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLEREYKEKCRDHNALKRNYDKLEEDLKLVRGQLDERDTLIAEQGLVIVLVENQDGSDARRALVSMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQTLLHQLSDVKSQGRRGGSLNGPLGAEDDYEAQKEEFGEMLQAFVGYDGKATNKILTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -