Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037744.1:35256019-35259534[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0059 0.89 11.0 4.4 1 23 98 121 98 121 0.97

2 13 0.01 1.5 10.3 4.6 2 23 253 275 253 275 0.91

3 13 0.00033 0.05 15.0 1.3 2 23 340 362 340 362 0.96

4 13 9.4 1.4e+03 0.9 7.5 3 23 450 471 449 471 0.94

5 13 4 6.1e+02 2.1 0.9 1 23 521 544 521 544 0.91

6 13 3.6e-05 0.0055 18.0 0.0 3 23 593 614 592 614 0.96

7 13 0.0031 0.46 11.9 0.0 6 23 646 664 644 664 0.92

8 13 0.068 10 7.7 5.7 2 23 709 731 708 731 0.96

9 13 0.099 15 7.2 4.2 3 23 746 767 744 767 0.92

10 13 7.9e-05 0.012 16.9 0.4 2 23 815 837 815 837 0.96

11 13 0.054 8.1 8.0 0.8 1 23 914 936 914 936 0.98

12 13 0.0001 0.015 16.6 0.3 2 23 952 974 951 974 0.96

13 13 0.0043 0.64 11.5 0.4 1 23 1051 1074 1051 1074 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0059	0.89	11.0	4.4	1	23	98	121	98	121	0.97
2	13	0.01	1.5	10.3	4.6	2	23	253	275	253	275	0.91
3	13	0.00033	0.05	15.0	1.3	2	23	340	362	340	362	0.96
4	13	9.4	1.4e+03	0.9	7.5	3	23	450	471	449	471	0.94
5	13	4	6.1e+02	2.1	0.9	1	23	521	544	521	544	0.91
6	13	3.6e-05	0.0055	18.0	0.0	3	23	593	614	592	614	0.96
7	13	0.0031	0.46	11.9	0.0	6	23	646	664	644	664	0.92
8	13	0.068	10	7.7	5.7	2	23	709	731	708	731	0.96
9	13	0.099	15	7.2	4.2	3	23	746	767	744	767	0.92
10	13	7.9e-05	0.012	16.9	0.4	2	23	815	837	815	837	0.96
11	13	0.054	8.1	8.0	0.8	1	23	914	936	914	936	0.98
12	13	0.0001	0.015	16.6	0.3	2	23	952	974	951	974	0.96
13	13	0.0043	0.64	11.5	0.4	1	23	1051	1074	1051	1074	0.98

Sequence Information

Coding Sequence: ATGGCGTCGACGATGGCTCGAGGCCCTATACTTCCGGAATCCGGTGACGCGGACAGCGATGGATCAAGCGGCGAAGACAGGGATACGTTGAAGCGTCCTCACGGCGACGCCGACTCCGCTGGCGCGAAGAAGCGGCGCAAGCAGTCAACGCCGGTTCGATTTCCAGCCACGTTGATCAGCGATGATCGGGAAGAGGAGTCGGAGGAAGAGGGTGCTGCGGAAGACAGCGAAGGTAAGCCAACGGTCGACCGGATCCATCAGACGTCAAAAGACGAAAACTTGAATAACGAATTCCGCTGCCAATATTGTAGTCAATTGTTTGATAGTAAACAAATGCTTAATCATCACTTGAACAGTAAACATAACCTCTCCACTTTTTCGTGGCAGAATACGCAGCGTTCGCCGGTTCACTCGCATATTGAAATAAAGCAGGAATCTAATACACATCAGGAGCAGCCTGAAAGTCCTGTCAATCTGTCAGGAATCGGTATCAAAAATTTCGCGGCAACGTGGTTGTCGGGTCACGTTCAATCGCAGCCACACCAGATTCAGTTGCAATCCCAAACCGACGATTGGCCACCTCCGGGTTCGACTGGTTCCCTGTCCTCGATATCCAATCACCTCCAAGCGCTACCTTTCCCCGGTGCATTGGCTCAGTATCTTCCATTGCCAAACTTTTCCTTAACCGACGCGAGCCAGGTTCCTAACAGACCGCCAATAGGACCTGCGCCCGTCAGGATATTCAATCCGGACGCTTACTGCGACCTCTGCAACAAAGAATTTTGTAACAAGTATTTCTTGAAAACACACAAAGCCAACAAGCACGGGATCTACGTAGACACTCCGGGGCAAACGGTTAGCGAGACGGGCTTCACCGGAACCTCGTACGCGGGTTCCTTTCTGTCCACAGGGATGAAACTAGATCAGCAATCGCAGCCACAGCTCAAACTGGAATCACCAACCGTTTCGATGCCTCCGGCGCAGGCTGTTCTGCAAGCGCCACCGAGCTTAAACGCGGTTTGTGAAATCTGTCAGAAGAAATTCAAGAACGAGGAGTCTGTGAGGAAACACAAGCAGAAGGTGCATAACAGCGACGGAACCGAAGGGAGTGACGTGCAAATGCTTCCTCCGCAAACTGTCGAAGATGAGAAGGACACTTCGCATCACAGCTTGAGCCCAGGTGCAATGGAAGGACTATTCAAGCAGGAATTTGGAGTTGAACAGGAGGACACGACCTTTATGCCAGCGCCGAGGCATCTCTCTCCGCAGTCGATTCAGCAAGCCAAGGATTCCGGTTTCAACGCCGATCGCCTCAAGAGACTGGGCGTTATAAATCCCGAGGCTTTTTGCGAGGTGTGCTGCAAGGAATACTGCAACAAGTACTTTCTACGTACACACAAAATGAAGAGACACGGCATCGTCGTTCAAGACAATGACAAATCGCCGAGTAATCCTGGAGCGGCTGCGACGTGGCATCACGTGCAGACCAGCCCGTTGAATCTGATCGTAGGAGAAACCAGCGGCAACAGTTCAGAATCCGGCGATCGTTCCGGTGAAGATTACGAGTGCAAGCCTTGCGGCATTCGTTTTCAGACAATAGGATTGCATCAGGCGCATCGTCAGAAGATGCACGATTCCGAGGAGCAGGGTTCGCCGAAGAACGAGAATGACGCCGACACGACGGACCAAAAGGCCGATTCCATAAGCGAAGATCTTCGAAAGCTTCAAACCATGATACTGCAATTGAATGGCTTGGAGTTTGGCCGAGGCGCACCGTGTCCGATTTGTGGAAAGGATTACGACAGCAGACAAGCTCTGAGGAACCATATGGCGATGGAACATGACGCTATAGTCGACGAGACTGTTTCGTCGCCTTTGCAAGGAACCGAGAAGTCACCGACACCGAACAGCATTACTGCCCTGAACAGTGCATTGTGCGATAAAGAATTCCCTAGTCAAGAAGCGCTGCGAAAACACATTTCCGAAGATCACCAACCCTCGACGTCAGCCTCGGTGCCATTGCCGAGCGCGTTGCCGACCACCTCGGCAACGATGACGTCGACAACGCCAACAGCTCCAACTCCGGAACGCAGGGCTCCAGTTTTGATAATGCCCACGTCGAGCTACTGCGAGATATGCAACAAGGAACTATGCAACAAATACTTCATGAAGACACACATGCACCGGATGCACGGTATCGAGATAGAAAACGGAGCTCAGATCGGTGGCGTCATATGCAACATATGCAACAAGGAACTTTGCAGTAAGTATTTCCTACGTGTTCACAAGCACAACACACACGGCATCATCGAGGAAGGCATGCCGTCGACTAGCAACTCCGCTAAACAGGCAGACACCGACACGAACAACAGCGAAGACCCCGCCCTGAAGCCGGAGCAAGTCGGCGACTTGAGCCATCGTTACTTCACCCACTTCACGGAGGTCTGTCCAATTTGCAGCAGGAGATTCAGAAGCACCAAGTGGCTGAAGGCACATCTGCTCAGCGATCACGGGAAGGCGGGAATCGAAAAGTGGCGAGAATTGGAGCAACAGTATCAGTCAGGACCTCGAGGCGGAAGGACACCTGGACCGTCGAGAGTCTCGCATCCAAATCCAAGTCTGAAAATACCCAACGGTATAGACTTGGCGCCGCACATGAAGACGGGGGACTACAGCGGGTTGGGAAATCAGGTTTTATCGACTCTCTTCGGGTCGACCGAAGACCAGCCGCTGAAGAGTTATCGTTGCTCGTACTGCACTTTCACGACGCCGGTCCTCGCCTTTCTCTTCGTCCACGAAAGATCGCACACGAGTCCTCAGAGCGGGACTAGCATAGAAGGCGAGCAAACGCTGCAGTGTCCCGTATGTCTGCAGGGTTTCTCTCAGCCCGAATTGCTCCAGCATCACTTACTCACTCAGCACCAATTTTCCGGGCTAATTCCATCCTTTCAACCGCAGTTATTCAGCAATTCAAGGCCCGAATCGTCCTCTGAAAAAGATAGCGAGTCCAAAGACCGCACCGATCTGGATTCGAAGGACGACTTGAAGCAGGTGAGTCCTCACACCTCGGCCGGTCTTCCTTCGAACGGTCTTCCGAAGGGTCAAAGACCGGAGGACGCTACCGCGGTACAAGTTACGCCCCAGGGGGCTTACAAATGTGCTCAGTGTGGCTACGCGACAGCGAATTTGAACAGGATCAAAAAACACATAAGAAAAGACCACCGAACGGTAACCGCCGACCAATCGGAAAGCGTGATTGGTGAGTTGACGCGCACCTTGAGAGACGTTGCGAGCAAGCAAAAGATCCCGGCCAGCTATGCCATGCCCCAAGACATGAATTCCAGCCCCGAGAAGACCGTGATGCAACCGTTTCTCATAGAGGAGTCAGAGGCTGTCCATGGTACCTCGGATACCGCAAGCTCGGAGAAGAAATTCGGTCCCGCACTTGTCTACCTGCCAGTTAGGACGCGCATAAGCGCGCCCTTGACGCTGTCCTTTAACCTTAGCCCTGCCTGA
Protein Sequence: MASTMARGPILPESGDADSDGSSGEDRDTLKRPHGDADSAGAKKRRKQSTPVRFPATLISDDREEESEEEGAAEDSEGKPTVDRIHQTSKDENLNNEFRCQYCSQLFDSKQMLNHHLNSKHNLSTFSWQNTQRSPVHSHIEIKQESNTHQEQPESPVNLSGIGIKNFAATWLSGHVQSQPHQIQLQSQTDDWPPPGSTGSLSSISNHLQALPFPGALAQYLPLPNFSLTDASQVPNRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTVSETGFTGTSYAGSFLSTGMKLDQQSQPQLKLESPTVSMPPAQAVLQAPPSLNAVCEICQKKFKNEESVRKHKQKVHNSDGTEGSDVQMLPPQTVEDEKDTSHHSLSPGAMEGLFKQEFGVEQEDTTFMPAPRHLSPQSIQQAKDSGFNADRLKRLGVINPEAFCEVCCKEYCNKYFLRTHKMKRHGIVVQDNDKSPSNPGAAATWHHVQTSPLNLIVGETSGNSSESGDRSGEDYECKPCGIRFQTIGLHQAHRQKMHDSEEQGSPKNENDADTTDQKADSISEDLRKLQTMILQLNGLEFGRGAPCPICGKDYDSRQALRNHMAMEHDAIVDETVSSPLQGTEKSPTPNSITALNSALCDKEFPSQEALRKHISEDHQPSTSASVPLPSALPTTSATMTSTTPTAPTPERRAPVLIMPTSSYCEICNKELCNKYFMKTHMHRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGMPSTSNSAKQADTDTNNSEDPALKPEQVGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLSDHGKAGIEKWRELEQQYQSGPRGGRTPGPSRVSHPNPSLKIPNGIDLAPHMKTGDYSGLGNQVLSTLFGSTEDQPLKSYRCSYCTFTTPVLAFLFVHERSHTSPQSGTSIEGEQTLQCPVCLQGFSQPELLQHHLLTQHQFSGLIPSFQPQLFSNSRPESSSEKDSESKDRTDLDSKDDLKQVSPHTSAGLPSNGLPKGQRPEDATAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHRTVTADQSESVIGELTRTLRDVASKQKIPASYAMPQDMNSSPEKTVMQPFLIEESEAVHGTSDTASSEKKFGPALVYLPVRTRISAPLTLSFNLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060630;
90% Identity: iTF_01048456;
80% Identity: -