Basic Information

Insect: Neodiprion lecontei
Gene Symbol: -
Assembly: GCA_001263575.1
Location: NW:887047-890562[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0044 0.28 11.0 4.4 1 23 98 121 98 121 0.97

2 13 0.0074 0.47 10.3 4.6 2 23 253 275 253 275 0.91

3 13 0.00024 0.015 15.0 1.3 2 23 313 335 313 335 0.96

4 13 7 4.4e+02 1.0 7.5 3 23 423 444 422 444 0.94

5 13 3 1.9e+02 2.1 0.9 1 23 494 517 494 517 0.91

6 13 2.7e-05 0.0017 18.0 0.0 3 23 566 587 565 587 0.96

7 13 0.0023 0.14 11.9 0.0 6 23 619 637 617 637 0.92

8 13 0.051 3.2 7.7 5.7 2 23 682 704 681 704 0.96

9 13 0.074 4.6 7.2 4.2 3 23 719 740 717 740 0.92

10 13 5.9e-05 0.0037 16.9 0.4 2 23 788 810 788 810 0.96

11 13 0.04 2.5 8.0 0.8 1 23 887 909 887 909 0.98

12 13 7.5e-05 0.0047 16.6 0.3 2 23 925 947 924 947 0.96

13 13 0.0032 0.2 11.5 0.4 1 23 1024 1047 1024 1047 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0044	0.28	11.0	4.4	1	23	98	121	98	121	0.97
2	13	0.0074	0.47	10.3	4.6	2	23	253	275	253	275	0.91
3	13	0.00024	0.015	15.0	1.3	2	23	313	335	313	335	0.96
4	13	7	4.4e+02	1.0	7.5	3	23	423	444	422	444	0.94
5	13	3	1.9e+02	2.1	0.9	1	23	494	517	494	517	0.91
6	13	2.7e-05	0.0017	18.0	0.0	3	23	566	587	565	587	0.96
7	13	0.0023	0.14	11.9	0.0	6	23	619	637	617	637	0.92
8	13	0.051	3.2	7.7	5.7	2	23	682	704	681	704	0.96
9	13	0.074	4.6	7.2	4.2	3	23	719	740	717	740	0.92
10	13	5.9e-05	0.0037	16.9	0.4	2	23	788	810	788	810	0.96
11	13	0.04	2.5	8.0	0.8	1	23	887	909	887	909	0.98
12	13	7.5e-05	0.0047	16.6	0.3	2	23	925	947	924	947	0.96
13	13	0.0032	0.2	11.5	0.4	1	23	1024	1047	1024	1047	0.98

Sequence Information

Coding Sequence: ATGGCGTCGACGATGGCTCGAGGCCCTATACTTCCGGAATCCGGTGACGCGGACAGCGATGGATCAAGCGGCGAAGACAGGGATACGTTGAAGCGTCCTCACGGCGACGCCGACTCCGCTGGCGCGAAGAAGCGGCGCAAGCAGTCAACGCCGGTTCGATTTCCAGCCACGTTGATCAGCGATGATCGGGAAGAGGAGTCGGAGGAAGAGGGTGCTGCGGAAGACAGCGAAGGTAAGCCAACGGTCGACCGGATCCATCAGACGTCAAAAGACGAAAACTTGAATAACGAATTCCGCTGCCAATATTGTAGTCAATTGTTTGATAGTAAACAAATGCTTAATCATCACTTGAACAGTAAACATAACCTCTCCACTTTTTCGTGGCAGAATACGCAGCGTTCGCCGGTTCACTCGCATATTGAAATAAAGCAGGAATCTAATACACATCAGGAGCAGCCTGAAAGTCCTGTCAATCTGTCAGGAATCGGTATCAAAAATTTCGCGGCAACGTGGTTGTCGGGTCACGTTCAATCGCAGCCACACCAGATTCAGTTGCAATCCCAAACCGACGATTGGCCACCTCCGGGTTCGACTGGTTCCCTGTCCTCGATATCCAATCACCTCCAAGCGCTACCTTTCCCCGGTGCATTGGCTCAGTATCTTCCATTGCCAAACTTTTCCTTAACCGACGCGAGCCAGGTTCCTAACAGACCGCCAATAGGACCTGCGCCCGTCAGGATATTCAATCCGGACGCTTACTGCGACCTCTGCAACAAAGAATTTTGTAACAAGTATTTCTTGAAAACACACAAAGCCAACAAGCACGGGATCTACGTAGACACTCCGGGGCAAACGCCACAGCTCAAACTGGAATCACCAACCGTTTCGATGCCTCCGGCGCAGGCTGTTCTGCAAGCGCCACCGAGCTTAAACGCGGTCTGTGAAATCTGTCAGAAGAAATTCAAGAACGAGGAGTCTGTGAGGAAACACAAGCAGAAGGTGCATAACAGCGACGGAACCGAAGGGAGTGACGTGCAAATGCTTCCTCCGCAAACTGTCGAAGATGAGAAGGACACTTCGCATCACAGCTTGAGCCCAGGTGCAATGGAAGGACTATTCAAGCAGGAATTTGGAGTTGAACAGGAGGACACGACCTTTATGCCAGCGCCGAGGCATCTCTCTCCGCAGTCGATTCAGCAAGCCAAGGATTCCGGTTTCAACGCCGATCGCCTCAAGAGACTGGGCGTTATAAATCCCGAGGCTTTTTGCGAGGTGTGCTGCAAGGAATACTGCAACAAGTACTTTCTACGTACACACAAAATGAAGAGACACGGCATCGTCGTTCAAGACAATGACAAATCGCCGAGTAATCCTGGAGCGGCTGCGACGTGGCATCACGTGCAGACCAGCCCGTTGAATCTGATCGTAGGAGAAACCAGCGGCAACAGTTCAGAATCCGGCGATCGTTCCGGCGAAGATTACGAGTGCAAGCCTTGCGGCATTCGTTTTCAGACAATAGGATTGCATCAGGCGCATCGTCAGAAGATGCACGATTCCGAGGAGCAGGGTTCGCCGAAGAACGAGAATGACGCCGACACGACGGACCAAAAGGCCGATTCCATAAGCGAAGATCTTCGAAAGCTTCAAACCATGATACTGCAATTGAATGGCTTGGAGTTTGGCCGAGGCGCACCGTGTCCGATTTGTGGAAAGGATTACGACAGCAGACAAGCTCTGAGGAACCATATGGCGATGGAACATGACGCTATAGTCGACGAGACTGTTTCGTCGCCTTTGCAAGGAACCGAGAAGTCACCGACACCGAACAGCAGTACTGCCCTGAACAGTGCATTATGCGATAAAGAATTCCCTAGTCAAGAAGCGCTGCGAAAACACATTTCCGAAGATCACCAACCCTCGACGTCAGCCTCGGTGCCATTGCCGAGCGCGTTGCCGACCACCTCGGCAACGATGACGTCGACAACGCCAACAGCTCCAACTCCGGAACGCAGGGCTCCAGTTTTGATAATGCCCACGTCGAGCTACTGCGAGATATGCAACAAGGAACTATGCAACAAATACTTCATGAAGACACACATGCACCGGATGCACGGTATCGAGATAGAAAACGGAGCTCAGATCGGTGGCGTCATATGCAATATATGCAACAAGGAACTTTGCAGCAAGTATTTCCTACGTGTTCACAAGCACAACACACACGGCATCATCGAGGAAGGCATGCCGTCGACTAGCAACTCCGCTAAACAGGCAGACACCGACACGAACAACAGCGAAGACCCCGCCCTGAAGCCGGAGCAAGTCGGCGACTTGAGCCATCGTTACTTCACCCACTTCACGGAGGTCTGTCCAATTTGCAGCAGGAGATTCAGAAGCACCAAGTGGCTGAAGGCACATCTGCTCAGCGATCACGGGAAGGCGGGAATCGAAAAGTGGCGAGAATTGGAGCAACAGTATCAGTCAGGACCTCGAGGCGGAAGGACACCTGGACCGTCGAGAGTCTCGCATCCAAATCCAAGTCTGAAAATACCCAACGGTATAGACTTGGCGCCGCACATGAAGACGGGGGACTACAGCGGGTTGGGAAATCAGGTTTTATCGACTCTCTTCGGGTCGACCGAAGACCAGCCGCTGAAGAGTTATCGTTGCTCGTACTGCACTTTCACGACGCCGGTCCTCGCCTTTCTCTTCGTCCACGAAAGATCGCACACGAGTCCTCAGAGCGGGACCAGCATAGAAGGCGAGCAAACGCTGCAGTGTCCCGTATGTCTGCAGGGTTTCTCTCAGCCCGAATTGCTCCAGCATCACTTACTCACTCAGCACCAATTTTCCGGGCTAATTCCATCCTTTCAACCGCAGTTATTCAGCAATTCAAGGCCCGAATCGTCCTCTGAAAAAGACAGCGAGTCCAAAGACCGCACCGATCTGGATTCGAAGGACGACTTGAAGCAGGTGAGTCCTCACACCTCGGCCGGTCTTTCTTCGAACGGTCTTCCGAAGGGTCAAAGACCGGAGGACGCTACCGCGGTACAAGTTACGCCCCAGGGGGCTTACAAATGTGCTCAGTGTGGCTACGCGACAGCGAATTTGAACAGGATCAAAAAACACATAAGAAAAGACCACCGAACGGTAACCGCCGACCAATCGGAAAGCGTGATTGGTGAGTTGACGCGCACCTTGAGAGACGTTGCGAGCAAGCAAAAGATCCCGGCCAGCTATGCCATGCCCCAAGACATGAATTCCAGCCCCGAGAAGACCGTGATGCAACCGTTTCTCATAGAGGAGTCAGAGGCTGTCCATGGTACCTCGGATACCGCAAGCTCGGAGAAGAAATTCGGTCCCGCACTTGTCTACCTGCCAGTTAGGACGCGCATAAGCGCGCCCTTGACGCTGTCCTTTAACCTTAGCCCTGCCTGA
Protein Sequence: MASTMARGPILPESGDADSDGSSGEDRDTLKRPHGDADSAGAKKRRKQSTPVRFPATLISDDREEESEEEGAAEDSEGKPTVDRIHQTSKDENLNNEFRCQYCSQLFDSKQMLNHHLNSKHNLSTFSWQNTQRSPVHSHIEIKQESNTHQEQPESPVNLSGIGIKNFAATWLSGHVQSQPHQIQLQSQTDDWPPPGSTGSLSSISNHLQALPFPGALAQYLPLPNFSLTDASQVPNRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTPQLKLESPTVSMPPAQAVLQAPPSLNAVCEICQKKFKNEESVRKHKQKVHNSDGTEGSDVQMLPPQTVEDEKDTSHHSLSPGAMEGLFKQEFGVEQEDTTFMPAPRHLSPQSIQQAKDSGFNADRLKRLGVINPEAFCEVCCKEYCNKYFLRTHKMKRHGIVVQDNDKSPSNPGAAATWHHVQTSPLNLIVGETSGNSSESGDRSGEDYECKPCGIRFQTIGLHQAHRQKMHDSEEQGSPKNENDADTTDQKADSISEDLRKLQTMILQLNGLEFGRGAPCPICGKDYDSRQALRNHMAMEHDAIVDETVSSPLQGTEKSPTPNSSTALNSALCDKEFPSQEALRKHISEDHQPSTSASVPLPSALPTTSATMTSTTPTAPTPERRAPVLIMPTSSYCEICNKELCNKYFMKTHMHRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGMPSTSNSAKQADTDTNNSEDPALKPEQVGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLSDHGKAGIEKWRELEQQYQSGPRGGRTPGPSRVSHPNPSLKIPNGIDLAPHMKTGDYSGLGNQVLSTLFGSTEDQPLKSYRCSYCTFTTPVLAFLFVHERSHTSPQSGTSIEGEQTLQCPVCLQGFSQPELLQHHLLTQHQFSGLIPSFQPQLFSNSRPESSSEKDSESKDRTDLDSKDDLKQVSPHTSAGLSSNGLPKGQRPEDATAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHRTVTADQSESVIGELTRTLRDVASKQKIPASYAMPQDMNSSPEKTVMQPFLIEESEAVHGTSDTASSEKKFGPALVYLPVRTRISAPLTLSFNLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060630;
90% Identity: iTF_01049182;
80% Identity: -