Npin013622.2
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037742.1:34348075-34352235[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.7e-05 0.013 16.8 0.7 1 23 49 72 49 72 0.97 2 13 6.6e-06 0.00099 20.3 0.5 2 23 79 100 78 100 0.97 3 13 1.4e-05 0.0021 19.3 2.1 2 23 107 128 106 128 0.96 4 13 3.7e-06 0.00055 21.1 0.5 1 23 134 156 134 156 0.97 5 13 0.0039 0.59 11.6 4.3 3 23 165 186 163 186 0.96 6 13 0.073 11 7.6 0.8 1 23 204 226 204 226 0.96 7 13 2 3e+02 3.1 0.9 2 20 233 251 232 253 0.89 8 13 6.4e-05 0.0097 17.2 1.5 1 23 941 963 941 963 0.98 9 13 0.00012 0.017 16.4 0.6 1 23 970 992 970 992 0.98 10 13 3e-05 0.0045 18.2 0.1 1 23 1000 1023 1000 1023 0.97 11 13 0.00082 0.12 13.7 10.3 1 23 1029 1051 1029 1051 0.98 12 13 0.00096 0.14 13.5 4.9 1 23 1057 1079 1057 1079 0.98 13 13 2.6e-06 0.00039 21.6 0.6 1 23 1085 1107 1085 1107 0.98
Sequence Information
- Coding Sequence
- ATGTtcgagaatgaaaaagaacTTGCTGATTATGAGTTGCCATCAGATGGTTCAATGTACGGAAATTCAACAGATAACGAAGAACAGACGAAAGTCAATCAACATGGAAAGAGCAAGGTTTTGACTGTCGATTTGATCAGACCGTTCAAATGTGATTTATGTGATTTGGTATTTGACAGAATGTCACAGTTGGACAAACACAAAAGAAATGTGCATAGCCAGGAAAGATCTCAAGTATGTCAGATATGTGGAAAAGGATTTTTCAGGTCAACAGATTTGAAAACCCACTTAAACATTCATTTAGGTACTAATAGATGCATTTGCGAAGTTTGCGGAAGAGAATTCAATCATGTTTCCAATTTAATTAGGCATGGCAGAACTCACTCAGGAGTGAAGCCGTACCCGTGCACCATTTGTGGCAAGCGATTTACACAGATCAATACATTAACCAGACACAAAGCTATTCACAAAAGAGGAGATGACAGTATGGACTGTTGTTTTTGTGACAAACAGTATAAAACTAGAAATGGTCTTAAACTACACATGAAGAAATCGCACGGAtttACTGGAAGTTGTCAGCAGGattatggaaaaattgttaaacgCAAACATTACTGTACAATTTGTGGGGACAGTTTTCAATTCGTTGAGCTATTAAAAGTTCACGAGAGTATGCATCAAGGCATAAATATATTGGAGTGCAAAAGTTGTAATCAGgTATTTCAAAAGATGGACGAAATCAAAGAACACAGATGTGATAAACCAAAACTATCTGGTGCAAATGAAATGATATCTGAGAAAATTGTGTCTGATAAAGAATTCTCTGAGAAGGCCAGAAaccaagaaaaaattatatcaaatttATCTACAGAGGAACAAAGTTTTGTTACAAAACTTGAGGTTGTTGACCAAGGTTCGAGAGATTCTTGTTCGGAAAGAATTCCTAGAGCCAAGGGTATCTCGAAAATGAATACGATACAGAATTCAAGTAACCATGAACCTGATTACAAATTCAAACCGACTATTCTTACATGTCCCAGCAACCGGGAAGAGGATAAGCGAACTAAAGAAACAATCGTTTATGTTACTACTGAACAGCTGGCAAACATGAATACGGAACAAGTAGTAGATACAGCAAACCATTTTTTGCATGAACACTTGATGCAACTAGCGGCCGAAAGTGCTTTGCAAACTGATAATATAAGTTCTCGAGACTGTGACAATGAAGCCGCTGTATCTGAGATGATAAGTAATTGTTGGAAAGAAATTGAGATACCTGATGTGAATGAACCTGAACTAGCCGAAAAGCAAGATGCGTCATCAAAAAATACTAcccaaaatataatttatgtacaCACGTTAAGAAAGGACGGTCTagcatttttgaataaaagtgGAGATCTCGGGAATATTGGTACTGAAATAATgccagaaaaattacaaaatattaaaCATGACTTAGAGGCGATCGAAAATTCTACTTTGCATGCCGAGCTTCAAGAGACACATACTTTGAAGCTTAGAGAAAGTGAATGCGTACAGAAGCATCATCTggttggaaataaaaattgtagtaaaaaaatttctggaGTTAAACGAAATCCAAATAAATTGTTAGATTCTgtgttatttgaaaatataaatttaaactGTTCAGAACCAAGTCATAGACAAGAATTAGACACAAGTTCGGTTACAAAAGGAATGAAAGTACTAGAAATTCAAGACTCTGTGCTGTACTTGAATGAAGAAAACTCTGATAAAGGACAACGCGAAGATGGTAATTTACAAACCACTTTACATGCACAGAATATGTTTGAAGACTTATTCAAAAATCATATGGATAACGTTAATACGGTAATCACTAAATCCTCTGACAATCAAGAACCAACTTTGAGATTGGTGAAAACAGACAACGAAGAACAATTCTATGAGCTACTGATCACAAATTGCTCAGAAAATGTGGTAGAATCTTGCGAAAtaggaaaaatttcagaggAGAGTATccacgaaaattcaaaaataacacCAAACGAGCCTATATCAGATTCACTGTTGAAATTAGTCCAATTAGAGAATGGTCAACGTATCTTGGAGTTAACGGAAAACACGCTATCAGAGGGATCTGATATTCCCGAAATGATTGGAAAGCGGACAGGAACGGAGGATATTGAAGAGGAAgtacaaaatttatcgaaaaatgttaATCACGATAAAAGTGGCGAAAAAAGTTTTGTGCATAACAGGGGGGAGAAAATCTTTTACCTGGCACAAAGTAACAAAGATAATTTGATTGACTTTTTTGAAATAGAAACACTTGGGACGCAAGACCAGAACTGTGATTTTGTCTCGGACGAAACTATACAGAATCTATCAATACAAACAAATTTTGACGATTTGGGAACtctgaacaaaaatgaaaatttggaaattgagaATCCGCCAATGGGTAATGAAAGTTGTGAAGAAATCTTTGGATTAATTCAGAATAATCTTCCGAAAtacaatgagaaaattaaaagcgAGTCCAAGAAAACTGTAAGGGAAGATGGACCCATGGTAAGACTTGTACAGAACGAAGATGGGGCGCAATTTTTCGAACTAATTCGAGGAGATTCAGAATTTGATGAAACGCAAGACTTTGAGTTGATTCAAACCTATGATACAGATGAAGGGCAAAGCACccaatttgtaaataatatcAAACACGCTGAAAACGTGCATACAGAAACAAGTTACACGATGAATGGTACCGACGAGAAAAGTAAACTAGAATCTGAAGTATCTCAGAAGAAAAAGCCGAAAAGTAATGTGAAAAAGTATAACTGTGACgtttgtaaaaaatcattttcaaaaggTTACAATTACAGACAACACATAGGAACACATTTTGCTGatcaacaaaaattcaaatgcaaGGAATGTGGGACATTATTTGCCTGGAAGTCTACTCTCAATAAACACATGGCTAGTCACAGAGCTGGAGGGCAACAGAAATTCGTCTGTGAAATTTGTCCAAAAGTCTATACAACTTTGTCTCAAGTAAACgAACACGTTAAGAGAGATCACCTCAAGGAGCGTAATCACAAGTGTACACATTGTTCGAAGACATTCTTCAAAAAGTTTGACCTCAAAACACATACCCGTACCCACACAAAAGAACGACCGTACGAGTGTCGCATTTGTTACAAGAGTTTCCATTATCAGAGTCACATTATTCGCCACGAGCGTATTCACTCAGGAGAGCGACCATACGCTTgtaatatttgtgaaaaagcATTCACGCAATTGGGGTCATTGAAGAATCACAGGCAGAGGCatcaagaattgaaaatagatATTTTAGATTATCAAATGGATGAAGACGATCCTTTACCGCGATCAACATTGTAG
- Protein Sequence
- MFENEKELADYELPSDGSMYGNSTDNEEQTKVNQHGKSKVLTVDLIRPFKCDLCDLVFDRMSQLDKHKRNVHSQERSQVCQICGKGFFRSTDLKTHLNIHLGTNRCICEVCGREFNHVSNLIRHGRTHSGVKPYPCTICGKRFTQINTLTRHKAIHKRGDDSMDCCFCDKQYKTRNGLKLHMKKSHGFTGSCQQDYGKIVKRKHYCTICGDSFQFVELLKVHESMHQGINILECKSCNQVFQKMDEIKEHRCDKPKLSGANEMISEKIVSDKEFSEKARNQEKIISNLSTEEQSFVTKLEVVDQGSRDSCSERIPRAKGISKMNTIQNSSNHEPDYKFKPTILTCPSNREEDKRTKETIVYVTTEQLANMNTEQVVDTANHFLHEHLMQLAAESALQTDNISSRDCDNEAAVSEMISNCWKEIEIPDVNEPELAEKQDASSKNTTQNIIYVHTLRKDGLAFLNKSGDLGNIGTEIMPEKLQNIKHDLEAIENSTLHAELQETHTLKLRESECVQKHHLVGNKNCSKKISGVKRNPNKLLDSVLFENINLNCSEPSHRQELDTSSVTKGMKVLEIQDSVLYLNEENSDKGQREDGNLQTTLHAQNMFEDLFKNHMDNVNTVITKSSDNQEPTLRLVKTDNEEQFYELLITNCSENVVESCEIGKISEESIHENSKITPNEPISDSLLKLVQLENGQRILELTENTLSEGSDIPEMIGKRTGTEDIEEEVQNLSKNVNHDKSGEKSFVHNRGEKIFYLAQSNKDNLIDFFEIETLGTQDQNCDFVSDETIQNLSIQTNFDDLGTLNKNENLEIENPPMGNESCEEIFGLIQNNLPKYNEKIKSESKKTVREDGPMVRLVQNEDGAQFFELIRGDSEFDETQDFELIQTYDTDEGQSTQFVNNIKHAENVHTETSYTMNGTDEKSKLESEVSQKKKPKSNVKKYNCDVCKKSFSKGYNYRQHIGTHFADQQKFKCKECGTLFAWKSTLNKHMASHRAGGQQKFVCEICPKVYTTLSQVNEHVKRDHLKERNHKCTHCSKTFFKKFDLKTHTRTHTKERPYECRICYKSFHYQSHIIRHERIHSGERPYACNICEKAFTQLGSLKNHRQRHQELKIDILDYQMDEDDPLPRSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048382;
- 90% Identity
- iTF_01048382;
- 80% Identity
- -