Basic Information

Insect: Neodiprion lecontei
Gene Symbol: -
Assembly: GCA_001263575.1
Location: NW:13323-20218[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1 64 3.6 0.0 1 16 11 26 11 28 0.89

2 14 6.7e-05 0.0042 16.8 0.7 1 23 67 90 67 90 0.97

3 14 5.1e-06 0.00032 20.3 0.5 2 23 97 118 96 118 0.97

4 14 1.1e-05 0.00068 19.3 2.1 2 23 125 146 124 146 0.96

5 14 2.9e-06 0.00018 21.1 0.5 1 23 152 174 152 174 0.97

6 14 0.003 0.19 11.6 4.3 3 23 183 204 181 204 0.96

7 14 0.057 3.6 7.6 0.8 1 23 222 244 222 244 0.96

8 14 1.6 98 3.0 0.9 2 20 251 269 250 271 0.89

9 14 5e-05 0.0031 17.2 1.5 1 23 959 981 959 981 0.98

10 14 9e-05 0.0056 16.4 0.6 1 23 988 1010 988 1010 0.98

11 14 2.3e-05 0.0015 18.2 0.1 1 23 1018 1041 1018 1041 0.97

12 14 0.00064 0.04 13.7 10.3 1 23 1047 1069 1047 1069 0.98

13 14 0.00074 0.047 13.5 4.9 1 23 1075 1097 1075 1097 0.98

14 14 2e-06 0.00013 21.6 0.6 1 23 1103 1125 1103 1125 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1	64	3.6	0.0	1	16	11	26	11	28	0.89
2	14	6.7e-05	0.0042	16.8	0.7	1	23	67	90	67	90	0.97
3	14	5.1e-06	0.00032	20.3	0.5	2	23	97	118	96	118	0.97
4	14	1.1e-05	0.00068	19.3	2.1	2	23	125	146	124	146	0.96
5	14	2.9e-06	0.00018	21.1	0.5	1	23	152	174	152	174	0.97
6	14	0.003	0.19	11.6	4.3	3	23	183	204	181	204	0.96
7	14	0.057	3.6	7.6	0.8	1	23	222	244	222	244	0.96
8	14	1.6	98	3.0	0.9	2	20	251	269	250	271	0.89
9	14	5e-05	0.0031	17.2	1.5	1	23	959	981	959	981	0.98
10	14	9e-05	0.0056	16.4	0.6	1	23	988	1010	988	1010	0.98
11	14	2.3e-05	0.0015	18.2	0.1	1	23	1018	1041	1018	1041	0.97
12	14	0.00064	0.04	13.7	10.3	1	23	1047	1069	1047	1069	0.98
13	14	0.00074	0.047	13.5	4.9	1	23	1075	1097	1075	1097	0.98
14	14	2e-06	0.00013	21.6	0.6	1	23	1103	1125	1103	1125	0.98

Sequence Information

Coding Sequence: ATGCGTTACATCACGAGTACAGAGGGAGAACACGTCTGTTCTATGTGCAACAACATGttcgagaatgaaaaagaactTGCTGATTATGAGTTGCCATCAGATGGTTCAATGTACGGAAATTCAACAGATAACGAAGAACAGACGAAAGTCAATCAACATGGAAAGAGCAAGGTTTTGACTGTCGATTTGATCAGACCGTTCAAATGTGATTTATGTGATTTGGTATTTGACAGAATGTCACAGTTGGACAAACACAAAAGAAATGTGCATAGCCAGGAAAGATCTCAAGTATGTCAGATATGTGGAAAAGGATTTTTCAGGTCAACAGATTTGAAAACCCACTTAAACATTCATTTAGGTACTAATAGATGCATTTGCGAAGTTTGCGGAAGAGAATTCAATCATGTTTCCAATTTAATTAGGCACGGCAGAACTCACTCAGGAGTGAAGCCGTACCCGTGCACCATTTGTGGCAAGCGATTTACACAGATCAATACATTAACCAGACACAAAGCTATTCACAAAAGAGGAGATGACAGTATGGACTGTTGTTTTTGTGACAAACAGTATAAAACTAGAAATGGTCTTAAACTACACATGAAGAAATCGCACGGAtttaCTGGAAGTTGTCAGCAGGattatggaaaaattgttaaacgCAAACATTACTGTACAATTTGTGGGGACagttttcaattcgttgaGCTATTAAAAGTTCACGAGAGTATGCATCAAGGCATAAATATATTGGAGTGCAAAAGTTGTAATCAGgTATTTCAAAAGATGGACGAAATCAAAGAACACAGATGTGATAAACCAAAATTATCTGGtgcaaatgaaatgatatctGAGAAAATTGTGTCTGATAAAGAATTCTCTGAGAAGGCCAGAaaccaagaaaaaattatatcaaatttatCTACAGAGCAACAAAGTTTTGTTACAAAACTTGAGGTTGTTGACCAAGGTTCGAGAGATTCTTGTTCGGAAAGAATTCCTAGAGCCAAGGGTATCTCGAAAATGAATACGATACAGAATTCAAGTAACCATGAACCTGATTACAAATTCAAACCGACTATTCTTACATGTCCCAGCAACCGGGAAGAGGATAAGCGAACTAAAGAAACAATCGTTTATGTTACTACTGAACAGCTGGCAAACATGAATACGGAACAAGTAGTAGATACAGCAAACCATTTTTTGCATGAACACTTGATGCAACTAGCGGCCGAAAGTGCTTTGCAAACTGATAATATAAGTTCTCAAGACTGTGACAATGAAGCCGCTGTATCTGAGATGATAAGTAATtgttggaaagaaattgagaTACCTGATGTGAATGAACCTGAACTAGCCGAAAAGCAAGATGCGACATCAAAAAATACTAcccaaaatataatttatgtacacaCGTTAAAAAAGGACGGTCTagcatttttgaataaaagtggAGATCTCGGGAATATTGGTACTGAAATAATGccagaaaaattacaaaatattaaacatgACTTAGAGGCGATCGAAAATTCTGCTTTGCATGCCGAGCTTCAAGAGACACATACTTTGAAGCTTAGAGAAAGTGAATGCGTACAGAAGCATCATCtggttggaaataaaaattgtagtaaaaaaatttctggagTTAAACGAAATCCAAATAAATTGTTAGATTCtgtgttatttgaaaatataaatttaaactgTTCAGAACCAAGTCATAGACAAGAATTAGACACAAGTTCGGTTACAAAAGGAATGAAAGTACTAGAAATTCAAGACTCTGTGCTGTACTTGAATGAAGAAAACTGTGATAAAGGACAACGCGAAGATGGTAATTTACAAACCACTTTACATGCACAGAATATGTTTGAAGACttattcaaaaatcatatGGATAACGTTAATACGGTAATCACTAAATCCTCTGACAATCAAGAACCAACTTTGAGATTGGTGAAAACAGACAACGAAGAACAATTCTATGAGCTACTGATCACAAATTGCTCAGAAAATGTGGTAGAATCTTGCGAAataggaaaaatttcagaggaGAGTATccacgaaaattcaaaaataacacCAAACGAGCCTATATCAGATTCACTGTTGAAATTAGTCCAATTAGAGAATGGTCAACGTATCTTGGAGTTAACGGAAAACACGCTATCAGAGGGATCTGATATTCCCGAAATGATTGGAAAGCGGACAGGAACGGAGGATATTGAAGAGgaagtacaaaatttatcgaaaaatgttaATCACGATAAAAGTggcgaaaaaagttttgtgcATAACAGGGGGGAGAAAATCTTTTACCTGGCACAAAGTAACAAAGATAATTTGATTGACTTTTTTGAAATAGAAACACTTGGGACGCAAGACCAGAACTGTGATTTTGTCTCGGACGAAACTATACAGAATCTATCAatacaaacaaattttgacgatttgGGAActctgaacaaaaatgaaaatttggaaattgagAATCCGCCAATGGGTAATGAAAGTTGTGAAGAAATCTTTGGATTAATTCAGAATAATCTTCCGAAatacaatgagaaaattaaaagcgAGTCCAAGAAAACTGTAAGGGAAGATGGACCCATGGTAAGACTTGTACAGAACGAAGATGGGGCGCAATTTTTCGAACTAATTCGAGGAGATTCAGAATTTGATGAAACGCAAGACTTTGAGTTGATTCAAACCTATGATACAGATGAAGGGCAAAGCACccaatttgtaaataatatcaaaCACGCTGAAAACGTGCATACAGAAACAAGTTACACGATGAATGGTACCGACGAGAAAAGTAAACTAGAATCTGAAGTATCTCAGAAGAAAAAGCCGAAAAGTAATGTGAAAAAGTATAACTGTGacgtttgtaaaaaatcattttcaaaaggtTACAATTACAGACAACACATAGGAACACATTTTGCTgatcaacaaaaattcaaatgcaaGGAATGTGGGACATTATTTGCCTGGAAGTCTACTCTCAATAAACACATGGCTAGTCATAGAGCTGGAGGGCAACAGAAATTCGTCTGTGAAATTTGTCCAAAAGTCTACACAACTTTGTCTCAAGTAAACgAACACGTTAAGAGAGATCACCTCAAGGAGCGTAATCACAAGTGTACACATTGTTCGAAGACATTCTTCAAAAAGTTTGACCTCAAAACACATACCCGTACCCACACAAAAGAACGACCGTACGAGTGTCGCATTTGTTACAAGAGTTTCCATTATCAGAGTCACATTATTCGCCACGAGCGTATTCACTCAGGAGAGCGACCATACGCTTgtaatatttgtgaaaaagcATTCACGCAATTGGGGTCATTGAAGAATCACAGGCAGAGGCatcaagaattgaaaatagatATTTTAGATTATCAAATGGATGAAGACGATCCTTTACCGCGATCAACATTGTAG
Protein Sequence: MRYITSTEGEHVCSMCNNMFENEKELADYELPSDGSMYGNSTDNEEQTKVNQHGKSKVLTVDLIRPFKCDLCDLVFDRMSQLDKHKRNVHSQERSQVCQICGKGFFRSTDLKTHLNIHLGTNRCICEVCGREFNHVSNLIRHGRTHSGVKPYPCTICGKRFTQINTLTRHKAIHKRGDDSMDCCFCDKQYKTRNGLKLHMKKSHGFTGSCQQDYGKIVKRKHYCTICGDSFQFVELLKVHESMHQGINILECKSCNQVFQKMDEIKEHRCDKPKLSGANEMISEKIVSDKEFSEKARNQEKIISNLSTEQQSFVTKLEVVDQGSRDSCSERIPRAKGISKMNTIQNSSNHEPDYKFKPTILTCPSNREEDKRTKETIVYVTTEQLANMNTEQVVDTANHFLHEHLMQLAAESALQTDNISSQDCDNEAAVSEMISNCWKEIEIPDVNEPELAEKQDATSKNTTQNIIYVHTLKKDGLAFLNKSGDLGNIGTEIMPEKLQNIKHDLEAIENSALHAELQETHTLKLRESECVQKHHLVGNKNCSKKISGVKRNPNKLLDSVLFENINLNCSEPSHRQELDTSSVTKGMKVLEIQDSVLYLNEENCDKGQREDGNLQTTLHAQNMFEDLFKNHMDNVNTVITKSSDNQEPTLRLVKTDNEEQFYELLITNCSENVVESCEIGKISEESIHENSKITPNEPISDSLLKLVQLENGQRILELTENTLSEGSDIPEMIGKRTGTEDIEEEVQNLSKNVNHDKSGEKSFVHNRGEKIFYLAQSNKDNLIDFFEIETLGTQDQNCDFVSDETIQNLSIQTNFDDLGTLNKNENLEIENPPMGNESCEEIFGLIQNNLPKYNEKIKSESKKTVREDGPMVRLVQNEDGAQFFELIRGDSEFDETQDFELIQTYDTDEGQSTQFVNNIKHAENVHTETSYTMNGTDEKSKLESEVSQKKKPKSNVKKYNCDVCKKSFSKGYNYRQHIGTHFADQQKFKCKECGTLFAWKSTLNKHMASHRAGGQQKFVCEICPKVYTTLSQVNEHVKRDHLKERNHKCTHCSKTFFKKFDLKTHTRTHTKERPYECRICYKSFHYQSHIIRHERIHSGERPYACNICEKAFTQLGSLKNHRQRHQELKIDILDYQMDEDDPLPRSTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049109;
90% Identity: iTF_01049109;
80% Identity: -