Basic Information

Insect: Neodiprion pinetum
Gene Symbol: su(Hw)
Assembly: GCA_021155775.2
Location: CM037743.2:6334258-6339152[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0021 0.31 12.4 0.1 1 20 67 86 67 88 0.95

2 13 1.6e-05 0.0024 19.1 0.9 2 23 165 187 164 187 0.94

3 13 1.6e-05 0.0025 19.1 2.6 1 23 193 216 193 216 0.97

4 13 1.4e-05 0.0021 19.3 2.8 1 21 222 242 222 243 0.96

5 13 2.3e-07 3.5e-05 24.9 2.7 1 23 254 276 254 276 0.97

6 13 5.8e-05 0.0087 17.3 1.2 3 23 288 308 287 308 0.98

7 13 0.0005 0.075 14.4 0.6 3 23 316 336 315 336 0.98

8 13 1.2e-05 0.0018 19.5 4.6 1 23 342 364 342 364 0.99

9 13 1.2e-05 0.0017 19.5 2.1 1 23 370 392 370 392 0.94

10 13 9.7e-07 0.00015 22.9 1.0 1 23 398 421 398 421 0.96

11 13 1.4e-05 0.0021 19.3 0.6 1 23 427 449 427 449 0.95

12 13 1.2e-06 0.00017 22.7 2.5 1 23 455 477 455 477 0.98

13 13 3.1e-07 4.7e-05 24.5 2.1 2 23 484 506 483 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0021	0.31	12.4	0.1	1	20	67	86	67	88	0.95
2	13	1.6e-05	0.0024	19.1	0.9	2	23	165	187	164	187	0.94
3	13	1.6e-05	0.0025	19.1	2.6	1	23	193	216	193	216	0.97
4	13	1.4e-05	0.0021	19.3	2.8	1	21	222	242	222	243	0.96
5	13	2.3e-07	3.5e-05	24.9	2.7	1	23	254	276	254	276	0.97
6	13	5.8e-05	0.0087	17.3	1.2	3	23	288	308	287	308	0.98
7	13	0.0005	0.075	14.4	0.6	3	23	316	336	315	336	0.98
8	13	1.2e-05	0.0018	19.5	4.6	1	23	342	364	342	364	0.99
9	13	1.2e-05	0.0017	19.5	2.1	1	23	370	392	370	392	0.94
10	13	9.7e-07	0.00015	22.9	1.0	1	23	398	421	398	421	0.96
11	13	1.4e-05	0.0021	19.3	0.6	1	23	427	449	427	449	0.95
12	13	1.2e-06	0.00017	22.7	2.5	1	23	455	477	455	477	0.98
13	13	3.1e-07	4.7e-05	24.5	2.1	2	23	484	506	483	506	0.97

Sequence Information

Coding Sequence: ATGCCGCGTGTTATAGAAATCGTAAAGATAGAACATCCCGTCCCGTCAGGGAATGTCGAGGAGGCTGTTGAATTATTGTTTGGCGACTCACAAAACGAAAATGCCATACAGGCTGCAGATGCTCAGGAGGAGATTGAACTACTCAACGGACAGTCTGGGTCAGACGAAACTGAtcatataattgaaattataacaGACTACGAATGTGTTACCTGTCGCCGTATATTCAAATCAGAAGATTTGCTAAAGGATCATTTGGATGTATGTCGAGACGAGGATGACCGTTCAGATGCTTTAGAAATCGGACAAATAACTGGCTATGATTCAGACGACGAAGAGTACGTCGAAGAACCAGATGACGTCAGCCAAATTTCAGATGgcGGCAATACACCAAGAAACAACAATCTTGCAGCAGCGATAAAACCTGTGTCCGTCGACAAGTGTCATTGTTGTGGAGAGGATTCATTAACGGCACATACTGACGGATGTTTGAAGTGCGACCACtgtgaattttctttcaaaaaactttcTGCTCTGGAAAGGCACATGGTTGTGGTTCATTGGATACAACAAAACTTCACTTGCAAAGTGTGCGACCTTGCATTTGCCAATAAGAAAAGCCTAACCAAGCATCATTACACTGTTCATGCGAAACATCAAGTCTTTAAgtgTGAACGTTgtgacaaatatttttcaagaaagtATCATTTGGATAGACACATTATGCAAACTGGTTGCGACGGTGTATCTCGTGCTGGTTTTGCTTGCCAAGTTTGTCATAAGGAATTCACGCGCAAAGATAACTTACGAGAACACTTGCGTATGCATGCAGGAGCGCCGCAGAGGCAGAAAAAACAGGCATGTGCACATtgtccaaaaaaattttacacaaatcAACAATTAGTCATTCATGAGCGTACGCATACAGGAGAACGCCCAGTTGCGTGCGATCTGTGTCAAAAGAGTTTCCAGTCTCTTCCAGCCATGAAAAAACATCGACGTGTTCACACGGGCGAGAAACCATTCCAGTGCAAATTTTGTGACAAAAGATTTGCGGCACGTGAAACTTTGAATCGCCATCATCGTACACACACGGGAGATAAACCACATGTATGTCAGTATTGTGGTAAAACATTCATACAAGCAGTCCAGCTGCGGGCGCACGTATTTCATCATACAGGAGAACATGCATTTTACTGTGACGTTTGCGGTAAAGCCTTTAATCGCAAAACTAGACTAACCGTACACATGAGATTCGTTCATCAAGGAGCTGCACCATTCGAGTGTGACTTGTGCAAGAAAGCTTTCATCCGTAAAGAAGACCTTTCAAGACATTACGTTCTTCATACTGGAGTTAAACCACACAAATGTGACAAATGTTCGAAGAGATTTGCGGTCAAGTCCGCATTGCGTGTTCATATGAATACGCATAGACGTGAGATGCCACAGTCTTGCGATGAATGCGGACGTGCGTTTATTAGACAAGATTGCCTGATGCGGCACATGCGGACAAAGCATCGAGACATGCTGGAAGATGCTATGGCAGAAGCTGAGAAACGTCGCTTGCAGGAACAGTTATGTAAAATTGCCTCTAGCGCAGCTGCAAAGACAAAAAGTGTCGGAGCGAATGTTACTCTATCTCAAGATAAATTACTCAAAGCTATTGTTGATCTACTATCCTTGCTTGTCGAAGAAGAAACATTACAGGCATTCGGTTGGCCCAAAGCACCAATTCAAGACGTCCTGGAAGCTGTAATTAAGCGTTGTGGTCATCAACCCATTCCATCGGATAGTGATTTACTATTTGCTCAGCGTTTGAGAGAGAATGTAAAGATATTATTCACAGTTGTGATCGAAGATGAAACTGTTAAATCATTATTAACATCACAAACTGTTGATGAGGTAATATTACATGTTTTAAAGTTATCCAAAGAAAAGTAG
Protein Sequence: MPRVIEIVKIEHPVPSGNVEEAVELLFGDSQNENAIQAADAQEEIELLNGQSGSDETDHIIEIITDYECVTCRRIFKSEDLLKDHLDVCRDEDDRSDALEIGQITGYDSDDEEYVEEPDDVSQISDGGNTPRNNNLAAAIKPVSVDKCHCCGEDSLTAHTDGCLKCDHCEFSFKKLSALERHMVVVHWIQQNFTCKVCDLAFANKKSLTKHHYTVHAKHQVFKCERCDKYFSRKYHLDRHIMQTGCDGVSRAGFACQVCHKEFTRKDNLREHLRMHAGAPQRQKKQACAHCPKKFYTNQQLVIHERTHTGERPVACDLCQKSFQSLPAMKKHRRVHTGEKPFQCKFCDKRFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGEHAFYCDVCGKAFNRKTRLTVHMRFVHQGAAPFECDLCKKAFIRKEDLSRHYVLHTGVKPHKCDKCSKRFAVKSALRVHMNTHRREMPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDAMAEAEKRRLQEQLCKIASSAAAKTKSVGANVTLSQDKLLKAIVDLLSLLVEEETLQAFGWPKAPIQDVLEAVIKRCGHQPIPSDSDLLFAQRLRENVKILFTVVIEDETVKSLLTSQTVDEVILHVLKLSKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01048371;
90% Identity: iTF_01048371;
80% Identity: -