Basic Information

Insect: Neodiprion lecontei
Gene Symbol: su(Hw)
Assembly: GCA_001263575.1
Location: NW:56988-63825[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.1 12.4 0.1 1 20 72 91 72 93 0.95

2 13 1.2e-05 0.00078 19.1 0.9 2 23 170 192 169 192 0.94

3 13 1.3e-05 0.00079 19.1 2.6 1 23 198 221 198 221 0.97

4 13 2.7e-05 0.0017 18.0 2.7 1 21 227 247 227 248 0.95

5 13 1.8e-07 1.1e-05 24.9 2.7 1 23 259 281 259 281 0.97

6 13 4.4e-05 0.0028 17.3 1.2 3 23 293 313 292 313 0.98

7 13 0.00038 0.024 14.4 0.6 3 23 321 341 320 341 0.98

8 13 9.4e-06 0.00059 19.4 4.6 1 23 347 369 347 369 0.99

9 13 8.9e-06 0.00056 19.5 2.1 1 23 375 397 375 397 0.94

10 13 7.5e-07 4.7e-05 22.9 1.0 1 23 403 426 403 426 0.96

11 13 1.1e-05 0.00067 19.3 0.6 1 23 432 454 432 454 0.95

12 13 8.9e-07 5.6e-05 22.7 2.5 1 23 460 482 460 482 0.98

13 13 2.4e-07 1.5e-05 24.5 2.1 2 23 489 511 488 511 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.1	12.4	0.1	1	20	72	91	72	93	0.95
2	13	1.2e-05	0.00078	19.1	0.9	2	23	170	192	169	192	0.94
3	13	1.3e-05	0.00079	19.1	2.6	1	23	198	221	198	221	0.97
4	13	2.7e-05	0.0017	18.0	2.7	1	21	227	247	227	248	0.95
5	13	1.8e-07	1.1e-05	24.9	2.7	1	23	259	281	259	281	0.97
6	13	4.4e-05	0.0028	17.3	1.2	3	23	293	313	292	313	0.98
7	13	0.00038	0.024	14.4	0.6	3	23	321	341	320	341	0.98
8	13	9.4e-06	0.00059	19.4	4.6	1	23	347	369	347	369	0.99
9	13	8.9e-06	0.00056	19.5	2.1	1	23	375	397	375	397	0.94
10	13	7.5e-07	4.7e-05	22.9	1.0	1	23	403	426	403	426	0.96
11	13	1.1e-05	0.00067	19.3	0.6	1	23	432	454	432	454	0.95
12	13	8.9e-07	5.6e-05	22.7	2.5	1	23	460	482	460	482	0.98
13	13	2.4e-07	1.5e-05	24.5	2.1	2	23	489	511	488	511	0.97

Sequence Information

Coding Sequence: ATGCCGCGTGTTATAGAAATCGTAAAGATAGAACATCCCGTCCCGTCAGGGAATGTCGAGGAGGCTGTTGAACTATTGTTTGGCGACTCACAAAACGAAAATGCCATACAGGCTGCAGATGCTCAGGAGGAGATTGAACTACTCAACGGACAGTGTAAGGATAAAATGACTGGGTCAGACGAAACTGAtcatataattgaaattataacagACTACGAATGTGTTACCTGTCGCCGTATATTCAAATCAGAAGATTTGCTAAAGGATCATTTGGATGTATGTCGAGACGAGGATGACCGTTCAGATGCTTTAGAAATCGGACAAATAACTGGCTATGATTCAGACGACGAAGAGTACGTCGAAGAACCAGATGACGTCAGCCAAATTTCAGATGgCGGCAATACACCAAGAAACAACAATCTTGCAGCAGCGATAAAACCTGTGTCCGTCGACAAGTGTCATTGTTGTGGAGAGGATTCATTAACGGCACATACTGACGGATGTTTGAAGTGCGACCactgtgaattttctttcaaaaaactttctGCTCTGGAAAGGCACATGGTTGTGGTTCATTGGATACAACAAAACTTCACTTGCAAAGTGTGCGACCTTGCATTTGCCAATAAGAAAAGCCTAACCAAGCATCATTACACTGTTCATGCGAAACATCAAGTCTTTAAgtgTGAACGttgtgacaaatatttttcaagaaagtaTCATTTGGATAGACACGTTATGCAAACTGGTTGCGACGGTGTATCTCGTGCTGGTTTTGCTTGCCAAGTTTGTCATAAGGAATTCACGCGCAAAGATAACTTACGAGAACACTTGCGTATGCATGCAGGAGCGCCGCAGAGGCAGAAAAAACAGGCATGTGCACATtgtccaaaaaaattttacacaaatcaACAATTAGTCATTCATGAGCGTACGCATACAGGAGAACGCCCAGTTGCGTGCGATCTGTGTCAAAAGAGTTTCCAGTCTCTTCCAGCCATGAAAAAACATCGACGTGTTCACACRGGCGAGAAACCATTCCAGTGCAAATTTTGTGACAAAAGATTTGCGGCACGTGAAACTTTGAATCGCCATCATCGTACACACACGGGAGATAAACCACATGTATGTCAGTATTGTGGTAAAACATTCATACAAGCAGTCCAGCTGCGGGCGCACGTATTTCATCATACAGGAGAACATGCATTTTACTGTGACGTTTGCGGTAAAGCCTTTAATCGCAAAACTAGACTAACCGTACACATGAGATTCGTTCATCAAGGAGCTGCACCATTCGAGTGTGACTTGTGCAAGAAAGCTTTCATCCGTAAAGAAGACCTTTCAAGACATTACGTTCTTCATACTGGAGTTAAACCACACAAATGTGACAAATGTTCGAAGAGATTTGCGGTCAAGTCCGCATTGCGTGTTCATATGAATACGCATAGACGTGAGATGCCACAGTCTTGCGATGAATGCGGACGTGCRTTTATTAGACAAGATTGCCTGATGCGGCACATGCGGACAAAGCATCGAGACATGCTGGAAGATGCTATGGCAGAAGCTGAGAAACGTCGCTTGCAGGAACAGTTATGTAAAATTGCCTCTAGCGCAGCTGCAAAGACAAAAAGTGTCGGAGCGAATGTTACTCTATCTCAAGATAAATTACTCAAAGCTATTGTTGATCTACTATCCTTGCTTGTCGAAGAAGAAACATTACAGGCATTCGGTTGGCCCAAAGCACCAATTCAAGACGTCCTGGAAGCTGTAATTAAGCGTTGTGGTCATCAACCCATTCCATCGGATAGTGATTTACTATTTGCTCAGCGTTTGAGAGAGAATGTAAAGATATTATTCACAGTTGTGATCGAAGATGAAACTGTTAAATCATTATTAACATCACAAACTGTTGATGAGGTAATATTACATGTTTTAAAGTTATCCAAAGAAAAGTAG
Protein Sequence: MPRVIEIVKIEHPVPSGNVEEAVELLFGDSQNENAIQAADAQEEIELLNGQCKDKMTGSDETDHIIEIITDYECVTCRRIFKSEDLLKDHLDVCRDEDDRSDALEIGQITGYDSDDEEYVEEPDDVSQISDGGNTPRNNNLAAAIKPVSVDKCHCCGEDSLTAHTDGCLKCDHCEFSFKKLSALERHMVVVHWIQQNFTCKVCDLAFANKKSLTKHHYTVHAKHQVFKCERCDKYFSRKYHLDRHVMQTGCDGVSRAGFACQVCHKEFTRKDNLREHLRMHAGAPQRQKKQACAHCPKKFYTNQQLVIHERTHTGERPVACDLCQKSFQSLPAMKKHRRVHTGEKPFQCKFCDKRFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGEHAFYCDVCGKAFNRKTRLTVHMRFVHQGAAPFECDLCKKAFIRKEDLSRHYVLHTGVKPHKCDKCSKRFAVKSALRVHMNTHRREMPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDAMAEAEKRRLQEQLCKIASSAAAKTKSVGANVTLSQDKLLKAIVDLLSLLVEEETLQAFGWPKAPIQDVLEAVIKRCGHQPIPSDSDLLFAQRLRENVKILFTVVIEDETVKSLLTSQTVDEVILHVLKLSKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049096;
90% Identity: iTF_01049096;
80% Identity: -