Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037745.1:19063380-19066256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00099 0.15 13.4 0.1 1 22 120 141 120 143 0.91

2 14 2.3e-06 0.00035 21.7 1.3 1 23 150 172 150 172 0.98

3 14 7.5e-07 0.00011 23.3 4.5 1 23 178 200 178 200 0.98

4 14 0.00013 0.019 16.3 6.1 2 23 217 238 217 238 0.98

5 14 4.2e-08 6.3e-06 27.2 3.0 1 23 243 265 243 265 0.98

6 14 3.6e-07 5.5e-05 24.3 0.8 1 23 270 292 270 292 0.98

7 14 3.4e-08 5.2e-06 27.5 2.5 1 23 298 320 298 320 0.97

8 14 1.7e-05 0.0025 19.0 8.4 1 23 373 395 373 395 0.97

9 14 7.1 1.1e+03 1.3 0.3 3 17 434 448 432 449 0.89

10 14 2.4e-05 0.0036 18.5 0.9 1 23 461 483 461 483 0.98

11 14 9.9e-06 0.0015 19.7 3.9 2 23 500 521 500 521 0.98

12 14 8.1e-07 0.00012 23.2 0.8 1 23 526 548 526 548 0.98

13 14 2.7e-05 0.004 18.4 3.1 1 23 554 576 554 576 0.93

14 14 0.00046 0.07 14.5 7.1 1 23 582 604 582 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00099	0.15	13.4	0.1	1	22	120	141	120	143	0.91
2	14	2.3e-06	0.00035	21.7	1.3	1	23	150	172	150	172	0.98
3	14	7.5e-07	0.00011	23.3	4.5	1	23	178	200	178	200	0.98
4	14	0.00013	0.019	16.3	6.1	2	23	217	238	217	238	0.98
5	14	4.2e-08	6.3e-06	27.2	3.0	1	23	243	265	243	265	0.98
6	14	3.6e-07	5.5e-05	24.3	0.8	1	23	270	292	270	292	0.98
7	14	3.4e-08	5.2e-06	27.5	2.5	1	23	298	320	298	320	0.97
8	14	1.7e-05	0.0025	19.0	8.4	1	23	373	395	373	395	0.97
9	14	7.1	1.1e+03	1.3	0.3	3	17	434	448	432	449	0.89
10	14	2.4e-05	0.0036	18.5	0.9	1	23	461	483	461	483	0.98
11	14	9.9e-06	0.0015	19.7	3.9	2	23	500	521	500	521	0.98
12	14	8.1e-07	0.00012	23.2	0.8	1	23	526	548	526	548	0.98
13	14	2.7e-05	0.004	18.4	3.1	1	23	554	576	554	576	0.93
14	14	0.00046	0.07	14.5	7.1	1	23	582	604	582	604	0.97

Sequence Information

Coding Sequence: ATGGAACGTGAGGGCTGCAATGTTTTGTTCGAAAGCATTGATGGATTGGCACGTATGGCAGAAGAGCAGTCCGATAAGGATGCCGCGTCAACTTTGAGAGGATTTCTCGAGTATGTCGATACCCTCGCGAATGCAAACATTAAAATCAAGAGCAAGGATTCAATAAAGACGGAAGATGCCACCGCTGCCAATGtgattcaacaaaaattcacaaacaCGAATCTTACAGATTTAGTGGAAAAAGACGCTATGACAAAATCAGCCGTACAATACATCGCTCTGGCAGAAACGCAAGGTCCGTTCAACGAGGGGAGCACCGAAGAAGATTGGAAGCtgaatgaaagaaatcagAGCCCATACCGCTGTGCAATATGTCAGGTTCAATTTTCGAGTCGAGTTTCACTGGATAGACATATCGTAGACTTGCATCTAGGTACCACGGGCCGTTTCCAGTGTGATGTTTGTCACAAGGAGTTTTCCCGTGTGTCAGACTTAGCCAGGCACAAGTTGATACACACAGGCGTAAAGCCATTCCAATGCAATACTTGCCAGAAGCAATTTTCCCGACAGGATCATCTAAAGCAGCACATACTCAGTCATTCGCAATGTTCAGATGGCGAGTTTTTTGCTTTCGACAACGGCTTGAACAGGTGCACGATATGCCATAAACAGCTTTCTCGTCCTCAGCACCTAAGGACCCACATGCGTCAGCATTTGGGCACACTGTTCGAGTGCGACAAGTGTAGCAAAAGATTCTCACGCGCTTCGCATCTCAGAGCTCACATGAGACTCCACTTGGGTACATGTTTCAGATGTGAGATATGCCAAAAAGAATTCTCTCGACCTTCCGACTTGGATAGACACAAACTTACACATCTGGATAAGAAATTGTTCGATTGCCCCACGTGCCAAAAAAAGTTCTCCAGAAAAGACAACCTGAAAAAGCACATGCTTTCTCATGTCGAATCGATACCGACAAACCAAGAAAGCCACGAGAACATCGgctttgaaataaatatgggCGACGACAATTCTTGTTTAAATTTGAGAAAGAGTTTCCCATTACCCTTGCACCTGGAAGGACACACACCGAGTCGTGAGAGTGACACGAGATGCCACGAGTGTCACATTTGCAGAAAGCATTTTGCAAGAAAAGACCATTTGAAGAGACATATCGCCTCACATAAAATCTGCCCTCATCATCAGAGCCCAAATTGCGCAGGGTGTCAGGCGGTGAAAGAAGAGACAATGCTGCAGGTGGATTCGAGCACATTTGAGTGCAGGGAAAGATCGAGCAACTGCGACCTCTGTAGTGTACAGTTCGCCAGTActtacaattttgaaaacgatGTGTGCGCGCATAATTGGCGGGATAAAAGATTCGAGTGCGCGGTTTGCGAGAAGCGTTTCAACAGAAAGGTTCGGTTAAAAGAACACGTTCGCAGTCATGGGGATCAAAAGTTTTCTTCGTTTGACGGTAGAGACAAGGAAGAAAACAGGTGTAATATATGTCATAAACAACTGTCACGACCCGAACATTTGAAAGCACACATGCGGCTGCACTTAGGCACACTTTTCAAGTGCGATACATGTGGGAAAGAGTTCTCTCGATTGTCAGACTTGGACAGACACAAGCTAGTACACTCGGGACTCAAACGATTCATATGCATCATTTGCCACAAGCAATTTTCTCGTAAGGATTACTTGAAGAATCACATGCTATCGCACGCCAATCAAAAGTCATTTGAGTGTGACAAGTGTAAAAAACGATTTATGCATTTCTCCAATTTAAGAAATCACCTTCATCTTCATCTAACTGAGTAA
Protein Sequence: MEREGCNVLFESIDGLARMAEEQSDKDAASTLRGFLEYVDTLANANIKIKSKDSIKTEDATAANVIQQKFTNTNLTDLVEKDAMTKSAVQYIALAETQGPFNEGSTEEDWKLNERNQSPYRCAICQVQFSSRVSLDRHIVDLHLGTTGRFQCDVCHKEFSRVSDLARHKLIHTGVKPFQCNTCQKQFSRQDHLKQHILSHSQCSDGEFFAFDNGLNRCTICHKQLSRPQHLRTHMRQHLGTLFECDKCSKRFSRASHLRAHMRLHLGTCFRCEICQKEFSRPSDLDRHKLTHLDKKLFDCPTCQKKFSRKDNLKKHMLSHVESIPTNQESHENIGFEINMGDDNSCLNLRKSFPLPLHLEGHTPSRESDTRCHECHICRKHFARKDHLKRHIASHKICPHHQSPNCAGCQAVKEETMLQVDSSTFECRERSSNCDLCSVQFASTYNFENDVCAHNWRDKRFECAVCEKRFNRKVRLKEHVRSHGDQKFSSFDGRDKEENRCNICHKQLSRPEHLKAHMRLHLGTLFKCDTCGKEFSRLSDLDRHKLVHSGLKRFICIICHKQFSRKDYLKNHMLSHANQKSFECDKCKKRFMHFSNLRNHLHLHLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049091;
90% Identity: iTF_01049091;
80% Identity: iTF_01049091;