Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037745.1:19063380-19066256[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.15 4.7e+02 1.8 0.1 17 29 120 132 110 148 0.73

2 14 0.0045 14 6.7 0.1 16 38 149 168 145 172 0.84

3 14 0.0037 11 7.0 1.2 18 39 179 197 175 204 0.78

4 14 1.7e-05 0.052 14.5 2.2 14 39 213 239 207 242 0.86

5 14 0.018 54 4.8 0.9 17 40 243 263 240 268 0.87

6 14 0.021 65 4.5 1.7 15 28 268 281 260 291 0.81

7 14 0.00084 2.6 9.0 0.7 12 39 293 317 284 331 0.83

8 14 3.6 1.1e+04 -2.6 9.3 18 39 374 392 365 401 0.83

9 14 9.1 2.8e+04 -3.9 0.1 18 28 433 443 428 447 0.75

10 14 0.016 50 4.9 1.8 13 41 457 482 451 483 0.82

11 14 1.7e-05 0.053 14.4 1.2 12 40 494 519 487 524 0.76

12 14 0.012 37 5.3 0.5 5 28 516 537 512 553 0.79

13 14 0.00033 1 10.3 2.0 16 38 553 572 547 580 0.77

14 14 0.069 2.1e+02 2.9 3.6 6 39 572 601 567 604 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.15	4.7e+02	1.8	0.1	17	29	120	132	110	148	0.73
2	14	0.0045	14	6.7	0.1	16	38	149	168	145	172	0.84
3	14	0.0037	11	7.0	1.2	18	39	179	197	175	204	0.78
4	14	1.7e-05	0.052	14.5	2.2	14	39	213	239	207	242	0.86
5	14	0.018	54	4.8	0.9	17	40	243	263	240	268	0.87
6	14	0.021	65	4.5	1.7	15	28	268	281	260	291	0.81
7	14	0.00084	2.6	9.0	0.7	12	39	293	317	284	331	0.83
8	14	3.6	1.1e+04	-2.6	9.3	18	39	374	392	365	401	0.83
9	14	9.1	2.8e+04	-3.9	0.1	18	28	433	443	428	447	0.75
10	14	0.016	50	4.9	1.8	13	41	457	482	451	483	0.82
11	14	1.7e-05	0.053	14.4	1.2	12	40	494	519	487	524	0.76
12	14	0.012	37	5.3	0.5	5	28	516	537	512	553	0.79
13	14	0.00033	1	10.3	2.0	16	38	553	572	547	580	0.77
14	14	0.069	2.1e+02	2.9	3.6	6	39	572	601	567	604	0.81

Sequence Information

Coding Sequence: ATGGAACGTGAGGGCTGCAATGTTTTGTTCGAAAGCATTGATGGATTGGCACGTATGGCAGAAGAGCAGTCCGATAAGGATGCCGCGTCAACTTTGAGAGGATTTCTCGAGTATGTCGATACCCTCGCGAATGCAAACATTAAAATCAAGAGCAAGGATTCAATAAAGACGGAAGATGCCACCGCTGCCAATGtgattcaacaaaaattcacaaacaCGAATCTTACAGATTTAGTGGAAAAAGACGCTATGACAAAATCAGCCGTACAATACATCGCTCTGGCAGAAACGCAAGGTCCGTTCAACGAGGGGAGCACCGAAGAAGATTGGAAGCtgaatgaaagaaatcagAGCCCATACCGCTGTGCAATATGTCAGGTTCAATTTTCGAGTCGAGTTTCACTGGATAGACATATCGTAGACTTGCATCTAGGTACCACGGGCCGTTTCCAGTGTGATGTTTGTCACAAGGAGTTTTCCCGTGTGTCAGACTTAGCCAGGCACAAGTTGATACACACAGGCGTAAAGCCATTCCAATGCAATACTTGCCAGAAGCAATTTTCCCGACAGGATCATCTAAAGCAGCACATACTCAGTCATTCGCAATGTTCAGATGGCGAGTTTTTTGCTTTCGACAACGGCTTGAACAGGTGCACGATATGCCATAAACAGCTTTCTCGTCCTCAGCACCTAAGGACCCACATGCGTCAGCATTTGGGCACACTGTTCGAGTGCGACAAGTGTAGCAAAAGATTCTCACGCGCTTCGCATCTCAGAGCTCACATGAGACTCCACTTGGGTACATGTTTCAGATGTGAGATATGCCAAAAAGAATTCTCTCGACCTTCCGACTTGGATAGACACAAACTTACACATCTGGATAAGAAATTGTTCGATTGCCCCACGTGCCAAAAAAAGTTCTCCAGAAAAGACAACCTGAAAAAGCACATGCTTTCTCATGTCGAATCGATACCGACAAACCAAGAAAGCCACGAGAACATCGgctttgaaataaatatgggCGACGACAATTCTTGTTTAAATTTGAGAAAGAGTTTCCCATTACCCTTGCACCTGGAAGGACACACACCGAGTCGTGAGAGTGACACGAGATGCCACGAGTGTCACATTTGCAGAAAGCATTTTGCAAGAAAAGACCATTTGAAGAGACATATCGCCTCACATAAAATCTGCCCTCATCATCAGAGCCCAAATTGCGCAGGGTGTCAGGCGGTGAAAGAAGAGACAATGCTGCAGGTGGATTCGAGCACATTTGAGTGCAGGGAAAGATCGAGCAACTGCGACCTCTGTAGTGTACAGTTCGCCAGTActtacaattttgaaaacgatGTGTGCGCGCATAATTGGCGGGATAAAAGATTCGAGTGCGCGGTTTGCGAGAAGCGTTTCAACAGAAAGGTTCGGTTAAAAGAACACGTTCGCAGTCATGGGGATCAAAAGTTTTCTTCGTTTGACGGTAGAGACAAGGAAGAAAACAGGTGTAATATATGTCATAAACAACTGTCACGACCCGAACATTTGAAAGCACACATGCGGCTGCACTTAGGCACACTTTTCAAGTGCGATACATGTGGGAAAGAGTTCTCTCGATTGTCAGACTTGGACAGACACAAGCTAGTACACTCGGGACTCAAACGATTCATATGCATCATTTGCCACAAGCAATTTTCTCGTAAGGATTACTTGAAGAATCACATGCTATCGCACGCCAATCAAAAGTCATTTGAGTGTGACAAGTGTAAAAAACGATTTATGCATTTCTCCAATTTAAGAAATCACCTTCATCTTCATCTAACTGAGTAA
Protein Sequence: MEREGCNVLFESIDGLARMAEEQSDKDAASTLRGFLEYVDTLANANIKIKSKDSIKTEDATAANVIQQKFTNTNLTDLVEKDAMTKSAVQYIALAETQGPFNEGSTEEDWKLNERNQSPYRCAICQVQFSSRVSLDRHIVDLHLGTTGRFQCDVCHKEFSRVSDLARHKLIHTGVKPFQCNTCQKQFSRQDHLKQHILSHSQCSDGEFFAFDNGLNRCTICHKQLSRPQHLRTHMRQHLGTLFECDKCSKRFSRASHLRAHMRLHLGTCFRCEICQKEFSRPSDLDRHKLTHLDKKLFDCPTCQKKFSRKDNLKKHMLSHVESIPTNQESHENIGFEINMGDDNSCLNLRKSFPLPLHLEGHTPSRESDTRCHECHICRKHFARKDHLKRHIASHKICPHHQSPNCAGCQAVKEETMLQVDSSTFECRERSSNCDLCSVQFASTYNFENDVCAHNWRDKRFECAVCEKRFNRKVRLKEHVRSHGDQKFSSFDGRDKEENRCNICHKQLSRPEHLKAHMRLHLGTLFKCDTCGKEFSRLSDLDRHKLVHSGLKRFICIICHKQFSRKDYLKNHMLSHANQKSFECDKCKKRFMHFSNLRNHLHLHLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049095; iTF_01048363; iTF_01048369;
90% Identity: iTF_01049095; iTF_01048363; iTF_01048369;
80% Identity: iTF_01049095;