Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037740.1:37557055-37561318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.017 2.5 9.6 3.8 1 23 319 341 319 341 0.98

2 19 0.031 4.7 8.7 0.5 2 23 375 396 374 396 0.94

3 19 0.0002 0.03 15.6 1.9 1 23 443 465 443 465 0.97

4 19 0.13 20 6.8 0.4 2 23 469 490 468 490 0.95

5 19 2.1e-05 0.0032 18.7 1.8 2 23 536 557 535 557 0.97

6 19 8.4e-06 0.0013 20.0 4.4 1 23 562 584 562 584 0.97

7 19 0.00077 0.12 13.8 0.8 1 20 590 609 590 614 0.94

8 19 0.00061 0.092 14.1 3.0 1 23 672 694 672 694 0.98

9 19 0.00052 0.079 14.3 4.5 1 23 725 747 725 747 0.96

10 19 0.00025 0.037 15.4 0.7 1 20 752 771 752 773 0.94

11 19 0.00055 0.082 14.3 0.9 2 23 784 805 784 805 0.97

12 19 1.1e-05 0.0017 19.6 0.7 2 23 844 865 843 865 0.97

13 19 2.3e-05 0.0034 18.6 1.6 1 23 870 892 870 892 0.95

14 19 7.8e-05 0.012 16.9 1.5 1 23 898 920 898 920 0.98

15 19 4e-06 0.00061 21.0 0.4 1 23 936 958 936 958 0.95

16 19 3.3e-07 4.9e-05 24.4 0.6 1 23 964 986 964 986 0.99

17 19 3.6e-05 0.0054 18.0 0.2 1 23 992 1014 992 1014 0.97

18 19 0.00013 0.02 16.2 4.1 1 23 1020 1042 1020 1042 0.96

19 19 0.0093 1.4 10.4 0.4 1 20 1048 1067 1048 1069 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.017	2.5	9.6	3.8	1	23	319	341	319	341	0.98
2	19	0.031	4.7	8.7	0.5	2	23	375	396	374	396	0.94
3	19	0.0002	0.03	15.6	1.9	1	23	443	465	443	465	0.97
4	19	0.13	20	6.8	0.4	2	23	469	490	468	490	0.95
5	19	2.1e-05	0.0032	18.7	1.8	2	23	536	557	535	557	0.97
6	19	8.4e-06	0.0013	20.0	4.4	1	23	562	584	562	584	0.97
7	19	0.00077	0.12	13.8	0.8	1	20	590	609	590	614	0.94
8	19	0.00061	0.092	14.1	3.0	1	23	672	694	672	694	0.98
9	19	0.00052	0.079	14.3	4.5	1	23	725	747	725	747	0.96
10	19	0.00025	0.037	15.4	0.7	1	20	752	771	752	773	0.94
11	19	0.00055	0.082	14.3	0.9	2	23	784	805	784	805	0.97
12	19	1.1e-05	0.0017	19.6	0.7	2	23	844	865	843	865	0.97
13	19	2.3e-05	0.0034	18.6	1.6	1	23	870	892	870	892	0.95
14	19	7.8e-05	0.012	16.9	1.5	1	23	898	920	898	920	0.98
15	19	4e-06	0.00061	21.0	0.4	1	23	936	958	936	958	0.95
16	19	3.3e-07	4.9e-05	24.4	0.6	1	23	964	986	964	986	0.99
17	19	3.6e-05	0.0054	18.0	0.2	1	23	992	1014	992	1014	0.97
18	19	0.00013	0.02	16.2	4.1	1	23	1020	1042	1020	1042	0.96
19	19	0.0093	1.4	10.4	0.4	1	20	1048	1067	1048	1069	0.89

Sequence Information

Coding Sequence: ATGGACGCCGAAAAGGTAAATACGTCGGAACCTCTGGAAAGTGAGGAAAACATTGTAACCGTCGTAGAAATATGTCGAGTATGTTTGCTCGAGGGTTCAGAAATGAAAGACCTATTTGTTGAAACTGACGTTGCCTCGTTATCTGCCAAAGCAATGAGCTTCACCGCCGCTAAGATGTTACCAGGAGATGGCTTACCTACACATGTGTGTGCTTCTTGCgctgaaaaattagaaatggCCTATGAATTCAAGTTGCAAGTGGAGCAAGCGGATGGTGTTCTGCGAGAAAGATATGTGTCTTTAAATCTCAAGGAAGAATTATTCTTCAACGAGGTTGAGGTACACTTGGAAACTGATCAAAATAgtcaaaagaaagaggaacaGTCAATAGAAGATGAGATTCAACTCAGCACAGAATCCAAACACGATGACTCGGAAGATGCGGAAGTGGCGCCTTCACTCTTGAAAGATCATTTGGCACTTTTGCAGGTCGAAAAACTCGCAGAGGAAGAAAGAGCACATTTAGAAATAATGGAGACTAGCGAACGTCTACAAGAATCAATTAGGGAGCAAATGGTTATGGATCCCGGTATCATGGTCATTCAAGAACATGGCTATGTAACACAACGCAAATCAGAATTGAAGGAAGAATTGACGACAACTGAAGTTTCCGACAGCTCAGGGAAGAACAGGAATCCACAGAATGAGAAAAGTGAAGTACATGCGGATGAAGAAAGGAAAGGAGGTAATTTTGACCAAAGATTGATAGACATTAAAGCAGAAGCGTCACCATGTGAGGATTTGTTGCACATGgaaacgaggaaaagcaaACGGAAATCTGCTCGGAGAGCCCCTGTCCTTGACCATGACTCGGATGAAGATAATTACTTTGAAAATCTCAACTTGAGCTCTCGCTTGAAACAGAGTCAGTCAACCAAGGCCGAGAAGGTTTATTACATGTGTTATATCTGTGATAAACACTTTTTGTCGAAGGGCGTTTTGAAGGAACATATGCACTCGCATGAGGAAGTTAGGAAAGTTATGTCGCTGGTAAAGGTGCCTGAAAAAACCCAAAAAGTAACGTTGCAGACGAAGCATTCTCCATCCGGCAAGCAACCAAACAAATGTCCGTACTGCGGTAAGGAATATCTATACGTAATATCATACAATAAACACCTTAAGCAGCacgagaatgaaaaagaagatgGAAAAGAGGATCCGATGCCGCTAGAAGTGTCATTTCACGAGGATGAGAATACCTTGGACTTTGACAATTACGATAACAGTAATGATTCAGATCCCGATTACAACGAAGACAGCGATGATCATAATTGCGAAAAGTGTGAAGAAAGATTTAACGGCAAAAAGGCACTTGAAAAACACATGATCAAACACGAAATGCTTAAATGCAGCGTGTGTAATGAGGAATTTGAAGAATTggaagtttttaaaaatcatagaTCTCAACACGTCATTGAGGGAGTATTAACAGAAGATGATCTGAGGGCTGAAATCAAACAGGTCGATGAATTGGAGGAAAGTATACACGCAGATGAAGGAACTTATGTGCGTAGAAAAACTCGACATTCCAAAATAAAAGGCTTGCGTTGCCCTAAGTGTCCGATGGTGTATTCGCACAAAAAGTCTCTATCAAGGCATCTTGAAACTCACACAGGCACTAAATACGTATGTAAATCCTGCAACCAACAATTCACTAGAAAAGATCATTTGAGGCGACATATGGAGCAACACGGTAGAATGAAATCTTTCAAATGTACTCAATGCAACAAAACGTTTGGAAATGAATTGACCCTGCGAAATCACCTTGTAGCAACGAATCACAAAACTGTTATTCGCGGGGAAGAATACGATCccaataaacgaataaaacgTATTGCAGCCAAAGAGGCGCAGAAGATCATTGACAGaattaaaactgaaaataacACTGATGATAATGAAATCAGTGATGATGGAGAGGAGTCACAAAAGAAGACACCCGAAAAAAAGGAATACCAATGTGCGACTTGTAGCAGAAAATGCGCTTCCAAACAATCACTGACCAAACACATGGAGCTGCACATTAAGGATGAAAAGGTGGGCAAGGTAAATGATCGCGTGTCCGATGACGACTCGGACTTTGACGGTGGTTTGGATTGGCCTATGGACACTCACGAATGTTTGACCTGTAAGAAAAGATACAGTACGAAAAAATCGTTGTTGCGACATCAATTGCTGCATGAGGAACCCAACTTTGAGTGCGACATATGCAACGTTAAATTTTACCGCAAAGATAAATTAAAAGCACACTATGACAAATGTTCGGAAAAGAATCCAGACCAAGTACGAAAGTGCAACATTTGCGGGGATAGCTTTGAAAACAACGACATGTTGAAGGAGCACAGGACTAAGCACGTTATGGAAGGCATTTTGACAGAGGAAGATTTAAGAGATATTGAGCCACAGgtggaagaaagaaaacctGGAGAAAAAATAACTAGGAAAAGAAGAACTGACATCGTTGGACTCGAGTGCACAGAGTGTAATAAGCGATATACGTCTAGGAAAGGTTTGCTCCGTCACATACAGGTCCACGAAGGTAAAAAATACCTTTGCGATATTTGTCCAAAGAAATTTTATAGGCGAGAGCATCTCAAGATACACGTTGCTAAGCACAATATGATTAAACCATACAAATGTGATCGTTGCACCAAGCGTTTTGCCAAAGAAGAACAGCTGATAAATCATTTGTCTAAACATGACAGGAACttcaagaaaaacaaagaaacagaCAGCTCGAAAAGATTCCTGTGCGAAATCTGTTCAAAGAGCTTCACTCAGTCAACGACTTTAATCGCTCACCTCAGGGCGCACAATGGCATCAAGCCTTACGTTTGCGAAGTTTGTTCCCGACCCTTCACAACAAACGCCTATCTCAAGATGCACATGAGAACTCATACGCAAGAGAGACCTTACATTTGCCAGTACTGTTCACGGGCTTTTGCCAGAGCCGACACATTGGCGAATCACCTTACCTCTCATACAGGGGAAGCAAAATATCACTGTAAATATTGTCCGAAGAATTTCAGACGGTTGAAATCACTCAAGGAGCACGTATTCATCCACACCGGCCAAAGACCGTACGCTTGTCCGACATGTGATCGAAGGTTTAATAACAATGGAAGTCGATATGCGCACAGCAAGAGGTGCAAGCAAAACTTATTGCAAAATCAAAACAGAGCACAAAACTCCACCAACCAGGGAAGAGTTCAGACCAGCAATCAGGCGCAAACTATGAAACTTCAGAATGTGAAAACTATTACTATTACCAGACAAGCCGAGACCATTACGGCACAGCAAGTCATGCAGCATCAAGAAATTTTGATGCCCTTAATTTTACCTTTGACCGTTACATTGGCCGATGTTGAAGAGGAAGTTATCCTGCCCGAagctacaaaaatttttacaaccaCGTAA
Protein Sequence: MDAEKVNTSEPLESEENIVTVVEICRVCLLEGSEMKDLFVETDVASLSAKAMSFTAAKMLPGDGLPTHVCASCAEKLEMAYEFKLQVEQADGVLRERYVSLNLKEELFFNEVEVHLETDQNSQKKEEQSIEDEIQLSTESKHDDSEDAEVAPSLLKDHLALLQVEKLAEEERAHLEIMETSERLQESIREQMVMDPGIMVIQEHGYVTQRKSELKEELTTTEVSDSSGKNRNPQNEKSEVHADEERKGGNFDQRLIDIKAEASPCEDLLHMETRKSKRKSARRAPVLDHDSDEDNYFENLNLSSRLKQSQSTKAEKVYYMCYICDKHFLSKGVLKEHMHSHEEVRKVMSLVKVPEKTQKVTLQTKHSPSGKQPNKCPYCGKEYLYVISYNKHLKQHENEKEDGKEDPMPLEVSFHEDENTLDFDNYDNSNDSDPDYNEDSDDHNCEKCEERFNGKKALEKHMIKHEMLKCSVCNEEFEELEVFKNHRSQHVIEGVLTEDDLRAEIKQVDELEESIHADEGTYVRRKTRHSKIKGLRCPKCPMVYSHKKSLSRHLETHTGTKYVCKSCNQQFTRKDHLRRHMEQHGRMKSFKCTQCNKTFGNELTLRNHLVATNHKTVIRGEEYDPNKRIKRIAAKEAQKIIDRIKTENNTDDNEISDDGEESQKKTPEKKEYQCATCSRKCASKQSLTKHMELHIKDEKVGKVNDRVSDDDSDFDGGLDWPMDTHECLTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDMLKEHRTKHVMEGILTEEDLRDIEPQVEERKPGEKITRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCDRCTKRFAKEEQLINHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRAQNSTNQGRVQTSNQAQTMKLQNVKTITITRQAETITAQQVMQHQEILMPLILPLTVTLADVEEEVILPEATKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00719614;
90% Identity: iTF_01048368;
80% Identity: -