Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037741.1:8328200-8337238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.3e-05 0.014 16.7 1.4 1 23 487 509 487 509 0.96

2 18 2e-05 0.003 18.8 1.9 1 20 515 534 515 537 0.94

3 18 3.1e-05 0.0046 18.2 0.7 1 23 543 565 543 565 0.98

4 18 7.5e-05 0.011 17.0 4.4 1 21 571 591 571 593 0.95

5 18 2.3e-05 0.0035 18.6 4.6 1 23 599 621 599 621 0.99

6 18 2.3e-05 0.0035 18.6 5.3 1 23 627 649 627 649 0.97

7 18 8.9e-06 0.0013 19.9 7.1 1 23 655 677 655 677 0.97

8 18 8.7e-08 1.3e-05 26.2 2.7 1 23 683 705 683 705 0.98

9 18 6.4e-05 0.0096 17.2 6.7 1 23 711 733 711 733 0.97

10 18 2e-05 0.003 18.8 5.8 1 23 739 761 739 761 0.98

11 18 5.3e-07 7.9e-05 23.8 2.9 1 23 767 789 767 789 0.98

12 18 7.8e-06 0.0012 20.1 7.8 1 23 795 817 795 817 0.98

13 18 2.5e-05 0.0037 18.5 9.1 1 23 823 845 823 845 0.98

14 18 3.2e-05 0.0049 18.1 7.5 1 23 851 873 851 873 0.98

15 18 0.0016 0.23 12.8 8.8 1 21 879 899 879 901 0.94

16 18 1.2e-05 0.0018 19.5 0.4 1 23 907 929 907 929 0.98

17 18 0.028 4.3 8.9 4.5 1 23 939 961 939 961 0.98

18 18 4.6e-07 6.9e-05 23.9 1.3 1 23 967 989 967 989 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.3e-05	0.014	16.7	1.4	1	23	487	509	487	509	0.96
2	18	2e-05	0.003	18.8	1.9	1	20	515	534	515	537	0.94
3	18	3.1e-05	0.0046	18.2	0.7	1	23	543	565	543	565	0.98
4	18	7.5e-05	0.011	17.0	4.4	1	21	571	591	571	593	0.95
5	18	2.3e-05	0.0035	18.6	4.6	1	23	599	621	599	621	0.99
6	18	2.3e-05	0.0035	18.6	5.3	1	23	627	649	627	649	0.97
7	18	8.9e-06	0.0013	19.9	7.1	1	23	655	677	655	677	0.97
8	18	8.7e-08	1.3e-05	26.2	2.7	1	23	683	705	683	705	0.98
9	18	6.4e-05	0.0096	17.2	6.7	1	23	711	733	711	733	0.97
10	18	2e-05	0.003	18.8	5.8	1	23	739	761	739	761	0.98
11	18	5.3e-07	7.9e-05	23.8	2.9	1	23	767	789	767	789	0.98
12	18	7.8e-06	0.0012	20.1	7.8	1	23	795	817	795	817	0.98
13	18	2.5e-05	0.0037	18.5	9.1	1	23	823	845	823	845	0.98
14	18	3.2e-05	0.0049	18.1	7.5	1	23	851	873	851	873	0.98
15	18	0.0016	0.23	12.8	8.8	1	21	879	899	879	901	0.94
16	18	1.2e-05	0.0018	19.5	0.4	1	23	907	929	907	929	0.98
17	18	0.028	4.3	8.9	4.5	1	23	939	961	939	961	0.98
18	18	4.6e-07	6.9e-05	23.9	1.3	1	23	967	989	967	989	0.97

Sequence Information

Coding Sequence: ATGAACGGGGAGCAGCATGCACTGCCAGCGACTACGCAGGGGCAGCAAGAGGAAGTAAACGTGGGTCAAAGTGGTCGCCCTTCGTATCCGAGTGGATTGACCACTAGCTCTGGTCTTGGGAACGTAGGAAGTATTCCCCATTCGTCGGCAGATCTGCGCGTAGGTACAGCCGTAGCCTTAGCCTCTTCGGTAGCTAAATATTGGGTCCTGACCAATCTCTTTCCTGGGGCACCGCTTCCTCAGGTTTCGGTATATCACCACGCCCACCATAATTCCTCGCATCGAACTGCTGCTGGAGACACGGCAAATAAAGAACCAGCATCTGCGTTATCTCAAGAAATGGCATTGGCTCAGAACTCTCATCAGCAAGCATCTACTTCGCATCATCATCAGCAAACTTCGGTTAATACCAACAATCAACATAACTCCTTGCACCCAAATGCACAGatTCCAGTATCGCTGCCTGGTCTCAGTTTAGACGGTACCCACATACCCCCAAGTGTCAGCCATTTGCATGCAGCACATGCACAAATGCAGCAACAAATGCAGTCCCAACAGCAATtgcatcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacagcaacaacagcagcagcaacagcagcaacaacaacaacaacaacagcaatcACATCATCAAATGCAAAATCATCAGACTAGTCAAAATAGTGGGCACAGCCCGCCAAACCAGCCAAGTAATCAGAGGGatgaaaataaagtgaaaGATGAAGGTGGAAGTTGTACAACTGAGAGATGCAGTGATAATCAAGTTCACTGTCAGGTTCAGTGCGACCTCCAGTTGCAACCGCAGGCACAGGCCGACATGCAACAGAGTTTAatgcagcaacagcagcagcaacaacagcagcagcagcagcaacagcagcaaatTGGGGTTAATATAGGAGGAAATAGTTCTACAGATGGTGGAAATCAGAACAATTCTGACAGTATGAAAACtgagaaagaaaaggagaTGCGTCAGCATAGTATGGCGCAATTCCAGTTACCTGATCTTAAACCTGGAGGACATATGATGGATGTAAGAACGGCAGATGGTTCAGTTGTCAAAATAAGTGCTGGTAGCGAGCAAGATCTTGCAAAGACACTGGGCGTTGAGATGGTGCAGAACATGTACAAGGTCAACGTCGAGGATATAAATCAACTTTTGGCATACCATGAAGTTTTTGGTAAACTACAGAGTGAAATAGCTGCCGGAACAACATTGGTGGGCGGTACTGTGCCGACCCAAACAGTAACCACCATACAAAACGGAACTCCAATAGTGCAACAGGTTcagttgaataaatttgatatAAAAACAAGTGACGGAGAAGCAACCCCGGGACCAAGCGCATCTCCTGTCTCCGTAGGTAGTCATGCCTGCGAAGtatgtggaaaaatatttcagtttcGTTATCAACTTATTGTACATCGGAGATATCACACGGAGCGCAAGCCTTTTACATGCCAGGTCTGTGGTAAAGCATTTACCAATGCCAATGACCTCACACGCCATGGTAAATGCCATCTTGGAGGATCTATGTTCACTTGCGCGGTTTGTTTTCACGTGTTTGCTAATGCCCCATCACTGGAACGACATATGAAGAGACATGCTACTGACAAACCTTACAATTGTACCGTTTGCGGAAAAAGTTTCGCCAGGAAGGAACACTTGGACAACCACACTCGATGTCACACAGGCGAAACGCCTTATAGATGTCAGTATTGCGCCAAGACATTCACCAGGAAGGAGCACATGGTTAACCACGTTCGTAAACATACCGGTGAGACACCACATCGATGTGACATATGCAAGAAGAGTTTTACGAGAAAAGAGCATTTTATGAACCACGTTATGTGGCATACAGGGGAAACTCCTCATCACTGCCAAGTCTGTGGAAAGAAGTATACTCGCAAGGAACATCTCGCCAATCACATGCGATCCCACACCAACGATACGCCCTTTCGCTGTGAAATTTGTGGTAAGTCGTTCACACGGAAGGAGCACTTCACGAACCACATAATGTGGCATACCGGCGAGACACCGCATCGCTGTGATTTCTGCTCAAAGACGTTCACTCGGAAGGAGCATCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCCCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAATCACATCCGCCAACACACAGGGGAGACGCCATTCCGCTGCCAGTACTGCCCGAAGGCGTTCACACGTAAGGATCACTTGGTTAATCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCGTTTACTCGAAAGGAGCACCTGACCAATCACGTTCGTATCCATACTGGGGAATCGCCACACAGATGCGAGTTCTGCCAGAGGACCTTTACTAGGAAAGAACATCTTAACAATCATCTTCGCCAACATACAGGCGAATCTTCGCATTGCTGCAACGTATGCTCCAAACCATTCACCAGAAAAGAACACCTTGTGAATCACATGAGATGTCATACTGGCGAACGTCCGTTCGTTTGCACCGAATGCGGCAAAAGTTTCCCTCTTAAAGGAAACCTCTTGTTCCACATGCGATCCCACAACAAAGGTAGCAACGCGGAAAGACCGTTCAGATGCGATCTGTGCCCGAAAGATTTTATGTGCAAAGGACACTTGGTGTCCCATAGACGCTCTCATTCGGACGAAAGACCGCACAGCTGCCCGGATTGTGGAAAaacttttgttgaaaaaggaaaTATGTTAAGGCATCTTAGAAAGCATGCAGCTGAGGGACCGCCGACACAAGTCAGCACACCTTCGGCTATTCCTCAGCCAGGAGTTCTCCCTATTCCTACAGCTGCTGTTTTAGTTGGGCATCCATTGGCTCCACCAGCGCCACCGGTTGTGCCCCAACATACCGTCGTTGTGCCGACACCACCTGGAGTTTTAACGTCGTATTAA
Protein Sequence: MNGEQHALPATTQGQQEEVNVGQSGRPSYPSGLTTSSGLGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGAPLPQVSVYHHAHHNSSHRTAAGDTANKEPASALSQEMALAQNSHQQASTSHHHQQTSVNTNNQHNSLHPNAQIPVSLPGLSLDGTHIPPSVSHLHAAHAQMQQQMQSQQQLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSHHQMQNHQTSQNSGHSPPNQPSNQRDENKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPQAQADMQQSLMQQQQQQQQQQQQQQQQIGVNIGGNSSTDGGNQNNSDSMKTEKEKEMRQHSMAQFQLPDLKPGGHMMDVRTADGSVVKISAGSEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGESSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPIPTAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00060523;
80% Identity: -