Npin009891.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037742.1:2667179-2673103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-12 4.7e-09 36.7 0.0 1 39 312 351 312 355 0.90 2 4 3e-12 6.3e-09 36.3 0.1 2 39 367 404 366 407 0.94 3 4 1.1e-18 2.3e-15 56.9 0.0 2 45 422 466 421 466 0.97 4 4 6.4e-19 1.3e-15 57.6 0.1 1 42 473 515 473 516 0.97
Sequence Information
- Coding Sequence
- ATGCACGACACCCCCCCACCGCCACCTCCGTCACCCGACCAACTTACCCCTTACCCGTCAACCCACCTCGCGAACACCGCCAAAGGGGCGGAGGGGGGTGGGTATAGGTCTCTCGAATCACTCCTGAAGACTGCGGATCAATTGAAGATAAAGGGCCTCTGCGAGGTACCGGAAAGTAGAGAGGGTCCACCGTCTTCTGTTAGCCTAAGTTCACCGCCTAGGGATCGTGATTCTTCCGGTACCGGTACACCACGTTTGAATTATACAAAGCTTAGAAGACAGCATCATCCGAGGTATAAAAGGCCCAGGTTTGAGGCAAGGTCCTCGGATACACCGGGTAACAGGCATTTCGAGAAGTACAAAGAAGAGGAAACCGAAGGATTCAACAATCGGGACGACAAAGAGAATCACAGGGACTGGCAGACCGAAGATGAAGAGTTCGGTGAGCCGACAATAGTTTTAGAATCGCGACAAAAGGAAATAAGCAACGGTAACACGAACAACAATAACGGTGAGATGTTTTGTCACACAGGAATGGGACATTACGGGCACCATACGGATCCAGGAGACGTTGATTTACCACCCGAAACTCAACCTACACCTCCCAGTGCTACTCTAGTTGGTACTACGATAACGCATTTGAGAGACCCTGATCACCAATCGACAGaaatacaaaattgtgacagtgttaaaataaaatttgagaCACTGCACACGATGGACTCGACGGACACGATAGATATAGATAGTCATATGTCAGATCGAGCTAGCGTCAGTTCAAAAACGACCGGCGATAATGACAACATGATGATGATCACTCCAGAGCTTCTTGGCCTCATGCCGTCAGGCAGTTCCGGTCATTCCGATGGTGGGGACAACGGCAGATCACATTCCGGACAAATCGGCTCCCATCATCACGGATCCAAGTCTTGGACACAGGACGACATGGACGCCGCTCTGGACGCTTTGCGAAATCACGATATGAGCCTCACAAAAGCATCCGCTACTTTTGGGATTCCATCGACGACGTTGTGGCAGCGGGCGCATCGACTCGGTATCGATACGCCGAAAAAAGACGGTCCGACGAAGTCGTGGAGCGACGAGAGTCTGAACAACGCTTTGGAGGCTCTGAGGACGGGAACAATTTCCGCGAACAAGGCATCGAAAGCTTTCGGAATACCCTCAAGCACCTTGTACAAGATTGCCAGGAGAGAAGGGATCAGATTAGCGGCACCTTTCAACGCCAGTCCGACCACGTGGTCGCCCGCTGACCTAGACAGAGCCTTGGAAGCGATTCGGTCTGGACAAACGTCCGTCCAGCGTGCTTCCACGGAATTTGGTATCCCGACTGGAACTCTTTATGGCAGATGCAAAAGAGAGGGGATCGAATTGAGCAGGAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACTGAAGCTCTCGAGGCTGTTAGAATGGGTCACATGAGTATAAATCAAGCCGCGATACATTACAATTTGCCGTATTCGTCCCTTTACGGCAGATTCAAAAGAGGAAAGTATGAAGAACCGGTGGGAAATGAAATGTCACAGGACAGCAACAGCCTTCACTATCACAGTCCGAATCAAAATCACTCATCGTCTGTTCCCGATCAGATGCCTTATCAGGGTAGCTGA
- Protein Sequence
- MHDTPPPPPPSPDQLTPYPSTHLANTAKGAEGGGYRSLESLLKTADQLKIKGLCEVPESREGPPSSVSLSSPPRDRDSSGTGTPRLNYTKLRRQHHPRYKRPRFEARSSDTPGNRHFEKYKEEETEGFNNRDDKENHRDWQTEDEEFGEPTIVLESRQKEISNGNTNNNNGEMFCHTGMGHYGHHTDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHQSTEIQNCDSVKIKFETLHTMDSTDTIDIDSHMSDRASVSSKTTGDNDNMMMITPELLGLMPSGSSGHSDGGDNGRSHSGQIGSHHHGSKSWTQDDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRMGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDSNSLHYHSPNQNHSSSVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01413017;
- 80% Identity
- -