Npin026123.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- Usf1
- Assembly
- GCA_021155775.2
- Location
- CM037745.1:26135272-26136809[-]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.053 9e+02 1.0 0.0 11 38 140 168 139 172 0.82 2 2 6.2e-08 0.001 20.0 0.2 17 48 219 250 216 256 0.90
Sequence Information
- Coding Sequence
- atggatattttGGAGCAGCATCTTGACCAACAAGATGTCAGCGGGTCATCGAGGGTCAAAGACGACGAAACTACAGGCATAGTGCTCGAAGAGGCGGAATTTGTTGATTGCGACGGCGAAGGAGAAACTGTTGGAGAGGATGGAATACGCTATCAGGAAACTCTGGCGTACAGAGTTGTGCAGGTAAATGGAGGGACGAGTGGAAATGAAATCGAACTTCCTGTGACACAAGCAGCTAACAGCACAGTGCAGGTCCTAACGTCTCCTCTAAATGGTCAATTTTACGTTATTGGGAATGCCAACGAAGTCTTTACTACTGCTCAAACATCGAGGTCATTGGCCCCAAGAGCAACTCTTCAAATCGAGACACCACGCAATGTCACAACAGGACTTAAAAAGAGAGACGATAGGCGAAGAGCAACGCATAACGAAGTTGAGCGTCGGCGTCgagataaaattaataattggATTGCGAAGTTGGGCAAAATTATTCCAGAATGTAACAGCACTGCAAATGGTAATGCGAATGTAAGCGGAGATGGAAAAGCAAACTACGAAACGCAGaGTAAAGGAGGCATTCTGGCGAAAGCATGCGAGTACATAGGCGAGTTACGAGCAGCAAACCAAGGTTTGGGACAGTGTTTGCGCGATAACGACAAATTGCGGCATGAAATAACAGCTTTGAAACAATTAGTGGCGCAATTGAAGCGAGAAAACGCACAATTGAGATCGCAAGTCACGTCTCCCCAAACAACTTCAGAAGTTCATCTCAGTCCCTAA
- Protein Sequence
- MDILEQHLDQQDVSGSSRVKDDETTGIVLEEAEFVDCDGEGETVGEDGIRYQETLAYRVVQVNGGTSGNEIELPVTQAANSTVQVLTSPLNGQFYVIGNANEVFTTAQTSRSLAPRATLQIETPRNVTTGLKKRDDRRRATHNEVERRRRDKINNWIAKLGKIIPECNSTANGNANVSGDGKANYETQSKGGILAKACEYIGELRAANQGLGQCLRDNDKLRHEITALKQLVAQLKRENAQLRSQVTSPQTTSEVHLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070773;
- 90% Identity
- iTF_01199851;
- 80% Identity
- iTF_01048017;