Nlec004725.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neodiprion lecontei
Gene Symbol
ZNF236
Assembly
GCA_001263575.1
Location
NW:349546-370052[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 9.7e-06 0.00061 19.4 0.9 2 23 182 203 181 203 0.95
2 28 2.9e-05 0.0018 17.9 0.6 1 23 209 231 209 231 0.98
3 28 5.7e-06 0.00036 20.1 0.3 2 23 237 258 237 258 0.97
4 28 0.0059 0.37 10.6 0.2 3 23 266 286 264 286 0.96
5 28 5.6e-05 0.0035 17.0 1.0 2 23 297 318 297 318 0.98
6 28 7.4e-07 4.7e-05 22.9 1.0 1 23 339 361 339 361 0.99
7 28 1.2e-05 0.00077 19.1 0.7 1 20 367 386 367 389 0.94
8 28 4.4e-05 0.0028 17.3 1.4 1 23 395 418 395 418 0.95
9 28 1.2e-05 0.00078 19.1 3.7 1 23 427 450 427 450 0.98
10 28 2e-07 1.2e-05 24.7 2.8 1 23 561 583 561 583 0.99
11 28 1.7e-05 0.0011 18.6 1.1 1 23 589 611 589 611 0.99
12 28 0.017 1.1 9.2 8.1 1 23 617 639 617 639 0.98
13 28 7.2e-07 4.5e-05 23.0 1.4 1 23 645 667 645 667 0.98
14 28 0.00029 0.018 14.8 4.1 1 23 722 744 722 744 0.98
15 28 9e-06 0.00056 19.5 3.6 1 23 750 772 750 772 0.99
16 28 3.8e-05 0.0024 17.6 1.5 1 23 778 800 778 800 0.98
17 28 8.2e-05 0.0052 16.5 7.2 1 23 806 828 806 828 0.98
18 28 8.1e-07 5.1e-05 22.8 3.7 1 23 1152 1174 1152 1174 0.98
19 28 0.045 2.8 7.9 0.9 2 23 1198 1219 1197 1219 0.97
20 28 2e-05 0.0013 18.4 1.7 1 23 1225 1247 1225 1247 0.98
21 28 0.018 1.1 9.1 0.6 2 23 1254 1275 1253 1275 0.92
22 28 4.2e-08 2.6e-06 26.8 1.4 2 23 1342 1363 1341 1363 0.98
23 28 0.05 3.1 7.7 8.0 1 23 1369 1391 1369 1391 0.98
24 28 7.2e-05 0.0045 16.7 2.5 1 23 1397 1419 1397 1419 0.98
25 28 7.7e-05 0.0048 16.6 2.8 1 23 1425 1447 1425 1447 0.99
26 28 0.0029 0.18 11.6 1.3 2 23 1661 1682 1661 1682 0.97
27 28 4.8e-06 0.0003 20.4 5.9 1 23 1688 1710 1688 1710 0.98
28 28 2.5e-07 1.6e-05 24.4 2.0 1 23 1716 1739 1716 1739 0.97

Sequence Information

Coding Sequence
ATGTTGTCGGAGCAAGCTATTCTAACCGAGCAGCTGACTACTGGCACAGAATCGATGCCGCTCGGTTTCATAATATCTGATGATGGCAGAACTCTTCTGGCAGTCACAGAGCGGGATGACGGAATTCTGGAATTCATGTCTGTACCGGTGACCATTCAGCAAAGCAACGTGATTACAGCAGCTCCGATGAAAACGAACGAAGGAAGCTCTATATTTCAAGTAACGCTCGAAGCTATGAGTGCGGATAATGCAGCACAACAGTCAGCTCTATTTACGACACAGGGTTACCAGACCATCCCTGTTTTAACCGAACCGGAGCAGCCATCTTTTGCCCCAAAAGCCATTGAACTGAACGCTGGTGGCACTACCGTCGAACTCACCCCTAGCGTGACAGAAATTAACagtttacaaacaaaaaattttgaaatattcgaaaccCCTGTGTCCTCTGCTCTTCCACTTCCTCCACCTGTTGTCAAACGAAGTCCTGGCAGACCAAGAAAGGATGGAAGTACACCACCTTCGGCGCATCCGAATAACCTCAAGTGTAAAATATGTGGTAAAGGATTCACCAGACTAATGTTACTTCGAAGACATACCGAGCAACATGCAGAAGAGAAACCGCATCGTTGTCCGAAATGTCCCGCATCTTTTAACGTTCCTACTAATTTTACGCTTCATATGGCGACGCACAATATCGGTGAACCAAAGTGTCCAGAATGTGGTCGAAAGTTCGCCCGAATGGCGAGCCTCAAGTCTCACATGCTGCTGCACGAAAAGGAGGAGAACCTATTCTGCACGGAGTGCGAAGACGCCTTCACGACGAAGGCACAACTTGATGCCCATTTAAAACTGCACAATGAAAAATGGACCACAGACGATGTTAGAAAGTGTAAACTGTGCAACAAACAATTTACACAGCCGGCACTTTATCGTCTGCACATCCGCGAACACTATAGATTACAAACGAAATTAGTAAAGCAGACGAAGAAAGGGGTCAAGCAGAAGACCATgtacaaatgtaaaatatgtttgaaatcatttcaaaaaccGAGTCAGCTTGTACGCCACATAAGGGTTCACACTGGGGAGAAACCATTCCAGTGTACAATTTGTACTCGAGCGTTTACGCAGAAGGGATCCCTTCAAATACACATGTGGAAACACAACGGATTTCGACCGCACAATTGCAGCTTTTGCAACGCAAAATTTAGCCAAAAAGGAAACTTGAACGCTCATATACTCAGAGTCCATAACGTCCCGGATGGCAAGCCTTACTACAAATGCACGTACTGTCCTTGTACATTCAAGAAACTTGGAAGCCTCAACGCCCACATGAAGAAAATGCATTCAAATCCGAAACCACAAAGCTGTGTCAGCTCAACAGAAGACATGCAAGCGACTGTCGATACAGTCATGTCTCAGCTGGCCATGCTTGAATCTGGAGTTAAAAATCCAGCCGATTCTACGGCAAACAGTTCTCCAAATAAGGACATACTGCAACAAGCTTTGAAGAACAGTGGATTACCCAGCAAGGACAAAGAGCCGGCTCCAGAGGTGCAAACACCCAAGAAGGGTGAAGCACAGACCACTATGGTCACCTTACTGGACAGCAGTATAGACAGTGCTACGagAAAATATGTTACGATCAAGCAACGCACCATCGGAAATACAAGGTGGTATACTTGTTCTTATTGCCACAAAGAATTCAAGAAACCGTCGGATTTAATACGCCATTTACGTGTTCATACGCAGGAAAAACCGTTCAAGTGTTCATATTGTTCCCGGTCTTTCGCAGTGAAATCAACGATGATCGCACACGAGAGGACGCACACGGGAGTAAAAAAGTACATGTGCTGTAATTGTAACAAAATGTTCGCATGTCATAGCAGTCTCACGACACACATGAGGATTCACGCGGGTGTGAAACCATTCACGTGCAACATATGCGATAAATCTTTCAGTGCTAACACCCTACTTAAAAGCCACATGAAATCTCATgcgaaaacgaaaacaaaaccAACTCCTCAGACGGAAATAATCGCTCCGTCTATAGTGCTTGAGGAACCGTTAATCATCACAGACGCTGGGAACAAGATCAGTATTGCTCAGGTCCAGTCGAAACATCAGCAAGTTTATAATAGTAACGACGTTGCCAGGCCTCACAAGTGCTGGGTTTGCCCTGCGGCATTTAGAAAAATGAGCCACTTGAAACAGCACTATCGAAGACACACTGGAGAGCGACCGTATAAGTGTCAAAAATGCAACAGGAAGTTCACTTCCAACAGTGTACTGAAATCTCATTTGCAAACCCACGAAGGGTCAAGACCTTATAATTGCTCGATGTGTAGTGCGAAATTTTCTACACAAAGCAGTATGAAACGTCATCTAGCTACGCATAGTAATAAGAGACCATTCATGTGCCCTTACTGTCACAAAACATTCAAGACGTCGGTGAACTGTAGGAAGCACATGAAGATACATAAACACGAACTCGCACAGCAGCAGTTGAATCAGCAGCAGTCGGGACAGCAACAGCCTAATCAGCTGCAGGATAAACCGGCGATGACGGTACTATCCGAAAATTTAACACTACCTGAAGAAATGGAAGTCACATTCCAACCGCAAATGGCACCCGATTTTTCGCAAGCATTCTCCGATCAGTTTCACACTATTGCAGTTGAAAAAGATAAACCGTTGATCCCTCAGAACAATCCGATACAAACGATCGTTAACCAAGCCCAGCCTGCTGTCGAACCGATTAATTTAGGCCCAACCCAAACCCTGCATGCGGATGAAACTGGAACCATAACGTTACCCAATTATTCTGGGGACCAGACACTCACGCCgGAAAGTATTCgcgaaattgaagaaactttGAATCAGCAACTGTTCAACATTGGTATGAACCTTGGACTGGGAGGAAATTTGACTAGACAGATAAGCGAGACCTCGCCGAACTCCCTAGAACAACGAGAACAAcccattttaaatattatttacgaaAACTCAAAGAACGTAGAGACTTCTACCAGCGGTACAATAAACAGTGGAATATTTGCACCACAGTTTGATTCCTTCGACATGAGCCATATCGCACTTCAGGGGGAAAACGAGATGGACATTGGTATTACTCCAGCTAATTCAACAAGTATGGCAAGTATCTTGCCTAGATCTGCTCAGGAAGAGCAGCATTTAGTGTCTGTCACAACGACGACATCGATGCCGGACGATAGCCAGTCGAAACAACCGCGACATTTGATGGTTGTTAGTTCTATGCAATCGTGTCCTGAATTATCTCGTCCTGTTCAAGCCTGTCCAAAATATCCAAAAGTTATAGCCAAAGCAGATACTACTGACGGCTTGGACGTACCAACGTCGGAAGAAACGGTCAAGGATATCGCCGTCCAAGCTGAATCTTTGTTGCCTGAAAAACCATCGCAAATTCCTTCCTACAAATGCAAAGTCTGTGATAAAACTTTCAATAAGCAAAGTCAGTTAAGAACTCACAAAAAGATTCACACATTGGAAATGGCACAAAAACCTGAGGATAAGGAACTAGCATCTGTCGCAGAATCAGAAAATCTATTGCAATGTCACATGTGTAGTAAAACAGGACTCACCGCAGTCGCTTTAAAGGATCATCTTAAAACACATAAAGGCATCAAAGAATTTCAGTGCACAGAATGTCCTCTGAAGTTTTGCACGAATGGAGGACTTAGTAGGCATTTAAAAATCCatacaaataaaatATTATGGAAGTGTGCAACGTGCGATCTGACATTTCAAAATAAGACTCAATTGTTACTTCATGAAGAATTCCACCAAAATAGCACAAGTTTAAATACCGTAGAACCGGACAGTTCGCAAAAGGATCCGTTGACAATAGACGGCAACTACTTGGCCCCTCCTCATATACGATTAGAAGACAATTCTATTATTTCGGAAAAAGTTCTTATGGATGCAGTGGCCGAGAAAGAGACAGAAACCGATTTGAAAAAGGACAAAAAAGTTTACACAAACAAATGCAAATACTGCCCGAAAACTTTCCGGAAACCAAGCGATCTCGTTAGACATATCAGAACGCACACAGGGGAGCGACCTTATCAATGCGAGTATTGTAATAAATGTTTTGCTGTTAAATGCACACTAGATTGTCACATGAAAGTACATACTGGAAAAAAGACATTCTCATGTCACGTTTGCAACAGTCTTTTCACAACGAAAGGCAGTCTTAAGGTCCACATGCGATTGCATACTGgATCCAAACCTTTCAAATGCCCAACGTGCGATTTACGGTTCAGAACATCAGGGCACCGAAAAGTGCATTTACTAACCCACATGAGGGAGCACAAAGATCCCTCGAAGCCAAAGCCAAAGGTGCGAAAAATTGCTGCGATAGCTGGTGTCGCTGCCGAACTCGAAAGATCGGTAGGAAATAATGTTAATGCCGAGGCGACGGGGCCTCATGCCGAAGAATATGGGAATATCGATTCGATTACGATTGAGACTAACGCATTAACCGAAAATATCACGCCCCACATTACTTTCAACGCAGACGGAACGATATTGAACAATAACGCAATGTTGTCATTAAACGAGAGCAATGAGCTTGTCGCAAATCTCCATTTCCTCCTTGCTCACGGGTTGGTAACTATCCAATCTGACGACCCGATGTTACAACAGATGCCTGATGCTGAGACGAATGTTATACAAAATGGAACTACCGTTGAAGAGCTCATAGATCCGGAGTCGTTAAGAGCGCCGACGCAATCTCTGATAAGTAATACTGAAATGAGTGATTCGAATTCGCAGCCAGTTTTATATGAGACTGAGAACATGGAAAATGGCGGCACCGAGTCGCACGGGACGTTGGAACTCGATGACTGCATGCAAATAGATCCAGGGAAAATGGCATCCTTGTCGGATCCTGAGGAAAGTAACCAGAAACTGACAATTGATAGAACGCAATTTAGAAGAGAATGCGATATTTGTGGTAAAAGTTTTCTTAAACCGTGCCAGGTTGAGCGGCACAAGCGTATTCACACTGGAGAAAGGCCGTATAAGTGCAATTTATGCTCTAAATCATTTACGCAAAAGAGCACGttaaaaatacatcaaaaaCATCATACAGGGGATAGACCATATCCATGTCCTCATTGCGATTTTTCGTTTAGCCAGAAaggtaatttgaaaactcaTCTAAAACGTGTTCATCAGCTAGACACgttggtggtaaaaaaattgcggagAGGGCAGCATCTACTAAGTGCTAAAATAGAGCAAGATAATTTAGAAGATGACAGGATAATAGGACTGGAAGATATTTCGTTTGCTAACATTCACTGA
Protein Sequence
MLSEQAILTEQLTTGTESMPLGFIISDDGRTLLAVTERDDGILEFMSVPVTIQQSNVITAAPMKTNEGSSIFQVTLEAMSADNAAQQSALFTTQGYQTIPVLTEPEQPSFAPKAIELNAGGTTVELTPSVTEINSLQTKNFEIFETPVSSALPLPPPVVKRSPGRPRKDGSTPPSAHPNNLKCKICGKGFTRLMLLRRHTEQHAEEKPHRCPKCPASFNVPTNFTLHMATHNIGEPKCPECGRKFARMASLKSHMLLHEKEENLFCTECEDAFTTKAQLDAHLKLHNEKWTTDDVRKCKLCNKQFTQPALYRLHIREHYRLQTKLVKQTKKGVKQKTMYKCKICLKSFQKPSQLVRHIRVHTGEKPFQCTICTRAFTQKGSLQIHMWKHNGFRPHNCSFCNAKFSQKGNLNAHILRVHNVPDGKPYYKCTYCPCTFKKLGSLNAHMKKMHSNPKPQSCVSSTEDMQATVDTVMSQLAMLESGVKNPADSTANSSPNKDILQQALKNSGLPSKDKEPAPEVQTPKKGEAQTTMVTLLDSSIDSATRKYVTIKQRTIGNTRWYTCSYCHKEFKKPSDLIRHLRVHTQEKPFKCSYCSRSFAVKSTMIAHERTHTGVKKYMCCNCNKMFACHSSLTTHMRIHAGVKPFTCNICDKSFSANTLLKSHMKSHAKTKTKPTPQTEIIAPSIVLEEPLIITDAGNKISIAQVQSKHQQVYNSNDVARPHKCWVCPAAFRKMSHLKQHYRRHTGERPYKCQKCNRKFTSNSVLKSHLQTHEGSRPYNCSMCSAKFSTQSSMKRHLATHSNKRPFMCPYCHKTFKTSVNCRKHMKIHKHELAQQQLNQQQSGQQQPNQLQDKPAMTVLSENLTLPEEMEVTFQPQMAPDFSQAFSDQFHTIAVEKDKPLIPQNNPIQTIVNQAQPAVEPINLGPTQTLHADETGTITLPNYSGDQTLTPESIREIEETLNQQLFNIGMNLGLGGNLTRQISETSPNSLEQREQPILNIIYENSKNVETSTSGTINSGIFAPQFDSFDMSHIALQGENEMDIGITPANSTSMASILPRSAQEEQHLVSVTTTTSMPDDSQSKQPRHLMVVSSMQSCPELSRPVQACPKYPKVIAKADTTDGLDVPTSEETVKDIAVQAESLLPEKPSQIPSYKCKVCDKTFNKQSQLRTHKKIHTLEMAQKPEDKELASVAESENLLQCHMCSKTGLTAVALKDHLKTHKGIKEFQCTECPLKFCTNGGLSRHLKIHTNKILWKCATCDLTFQNKTQLLLHEEFHQNSTSLNTVEPDSSQKDPLTIDGNYLAPPHIRLEDNSIISEKVLMDAVAEKETETDLKKDKKVYTNKCKYCPKTFRKPSDLVRHIRTHTGERPYQCEYCNKCFAVKCTLDCHMKVHTGKKTFSCHVCNSLFTTKGSLKVHMRLHTGSKPFKCPTCDLRFRTSGHRKVHLLTHMREHKDPSKPKPKVRKIAAIAGVAAELERSVGNNVNAEATGPHAEEYGNIDSITIETNALTENITPHITFNADGTILNNNAMLSLNESNELVANLHFLLAHGLVTIQSDDPMLQQMPDAETNVIQNGTTVEELIDPESLRAPTQSLISNTEMSDSNSQPVLYETENMENGGTESHGTLELDDCMQIDPGKMASLSDPEESNQKLTIDRTQFRRECDICGKSFLKPCQVERHKRIHTGERPYKCNLCSKSFTQKSTLKIHQKHHTGDRPYPCPHCDFSFSQKGNLKTHLKRVHQLDTLVVKKLRRGQHLLSAKIEQDNLEDDRIIGLEDISFANIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01414380;
90% Identity
iTF_01049092;
80% Identity
-