Ntra029727.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- stc
- Assembly
- GCA_963243735.1
- Location
- OY725346.1:25738805-25762805[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 5.2e+04 -4.7 3.4 6 10 335 339 332 339 0.69 2 14 0.47 1.2e+04 -2.1 0.4 4 10 365 371 365 371 0.93 3 14 0.00018 4.7 8.8 15.3 3 19 379 395 378 395 0.93 4 14 6.8e-07 0.018 16.6 16.4 1 18 431 448 431 449 0.97 5 14 5.2e-09 0.00013 23.3 17.7 1 19 489 507 489 507 0.99 6 14 2 5.2e+04 -4.3 1.3 6 10 537 541 537 541 0.96 7 14 5.7e-08 0.0015 20.0 14.6 4 19 554 569 547 569 0.86 8 14 1.3 3.4e+04 -3.5 2.0 5 10 598 603 598 603 0.93 9 14 0.003 78 4.9 10.9 1 11 609 619 609 631 0.90 10 14 4.5e-09 0.00012 23.5 15.6 1 18 636 653 636 654 0.98 11 14 1.2 3e+04 -3.4 0.9 5 10 682 687 682 687 0.83 12 14 0.00069 18 7.0 14.3 1 19 693 710 693 710 0.89 13 14 2.3e-07 0.006 18.1 19.3 1 19 746 765 746 768 0.96 14 14 0.0024 61 5.2 13.9 1 18 775 793 775 794 0.93
Sequence Information
- Coding Sequence
- ATGTCTTATGATAATCAAGCAACGAGAAACCCAAGTATTAGTTTTCCTTCAGAAGAAAATTACTTCAGTCGTGGCTCCCAACATTTGAATGTCAATGATCAAAGAGGAATCCAGAGTAATAATCCTGTTGATATATCAAATTCTACATTAGAGCCTACAGCAAGAGAATTTATTCCAACAAGTGTTCAGAATGGTGCTGTTCGAAAAAGATCTCAATATCAAAATAAGATTAGAGATAACAAAGATCATGGTAACTGGAGAAATAAATATGGCAGTGGTAGAACATTCAACAGTTCTAGAAATACTTATCCCAATAAATCTACAAGAGAAAATTCATTTTCTTCCAATTATCAAGCTGATGCTAGTGAACACAGTTCATCTTTAGACCACCAACTTAGAAATTCTGATGATAATCAAGAAATAAACTTTGATATCGATGATATTCAAAATGAAGGTGAAGGTGAAAAGCATTCTGCATCAAGTTCATCAAGGATTTATGGACAATCTAAAAGATATGATAACTCTTATCAAGGGAAGTCCAGAAgtaattataatgaaaaatattctaaaaattatgaagaCAAGAGGAGCAATAATTATACAAGACAtaatagtaatttttcatattcaaaTGATGATTCTGGTACAAGACGAaatcaaaatcacaaaaaagggGGCTATAAGACTTATTATGATTCTAGAAGTAGTCAAAAATCTAAGGAAGGAAGTTCATCCAGTAATTGGAGACGAGCAGATACAAATTCAGATAAAGATTCAGTTAGAATGgtgaaaactaggaaaaaattggaTGCAGCTTCGCAAAGAGAAAGATTGGTTGAAATGCTCAATCGTCGCACATTGGAATGTCTGGTTTGttgtgataaaataaaaaattcggatAAAGTGTGGTCTTGCATTCTCTGCTACCATATTTTTCACCTAAACTGTGTCGTAGAATGggcaaaatcatcaaaaatagaaaatggttGGAGGTGTCCAGCTTGTCAGAATGTTTGCAGTGAAGTTCCTAAAAAGTACAGATGTTACTGTGGTAAAATTACAGAGCCCAGATATGAACCAGGCGTAGTTCCACATAGTTGTGGAGAGATGTGCTTAAGAAAAGGTCGTAATTGTGAACATAAATGTAGTATACAGTGCCACCCTGGTCCATGTCCAGACTGTACCATTATGATTTCAAAATCATGTGGTTGTGGGTCTACAAAGCAAATGGTTAAATGCAGCACTGATGTTGATATTATTTGTGATGCAATTTGCAATAAAGTATTAGAGTGTGGATTGCACTGCTGCCAGCAGATATGTCATCCTGGTGATTGTCAACTTTGCGATAAAATTATCTTGCAGGAATGTTATTGTGCCAAAGAAGGCAGGAAAGTTCCATGTTGTGGAGAATATAAAGGAAAGACACAATATAATTGTGGAgaaatatgtggaaaaatgttgTCCTGTGGAAATCATCATTGTCAACAGTTATGTCACGAGGGACCTTGCGAAGTCTGTCCTAAAGATGttaatgttataaaaagttGTCCTTGTGGTAAGACGCTGCTTAGTGAACCTAGATTATCTTGTTTGGATTCCATTCCATGTTGtgaaaagATATGTGGGAGAGTTTTACAATGTGGTCAACCAAGCGCCCCGCATAGATGTGAAAACAAATGTCACGATGGACCATGTCCACCTTGTTCTAAAAATACTTTTGTTAGATGTAGATGTGGTCATATGGACAAAGAATTACCTTGTCAGAAACTTACTTCAAAAGCTGATGATGCTAGATGCGAGAAGAAATGTACAAAaaaacgtTTATGTGGAAAGCACAGATGTAACCAATTATGTTGCATAGAACTAGAGCATATATGTCCACTTCCATGCAATCATGTGCTCACCTGTGGTCAGCATAGATGCGGACGTACTTGTCATTCCGGCAGATGCCCACCTTGTATGGAAACGAGTTTTGAGGAATTATATTGCGAGTGTGGAGCGAGCGTTTTGTACCCACCCATTCCTTGTGGAACAAGACCCCCAAATTGCTCCAAACCTTGTTCAAGACCGAGACCTTGCGGTCATGAAGTCAATCATAGTTGTCACACGGGTCCCTGTCCTCCTTGCACTGTTCTTTGTAAAAGGTGGTGCTATGGACATCATGAACAAAGATCAGCTATTCCCTGTCATCAAGAAAACTTTAGTTGTGGTTTACCTTGTGGGAAAGATTTGCCTTGTGGCAGACATAGATGTGTAAAACCGTGTCATGATGGACCTTGCCCTACGCCTTGCAAGCAGCCCTGCACTATGCCTAGAGAGTTGTGCGGTCATATTTGTGGAAGacCGTGTCATGATTCACCATGTCCTGAAAGTAGCTGCAAGCAAAATGTTCCAGTAACGTGTCAGTGTGGTTTACAGAAAAGTACGAGACCTTGTCTAGATGTAGCAgatgaatttattaatatccaaATGGCGcagttgaaagaaaaaatgggaaatttggCTACTACTTCGACTGTTGATTTAACTGATATTTTAAATGGTCCAAAGAAGCCCACTATTTTGAAGatattggaATGTACAGAAGAATGTCGCGTTTTGGACAGAAACAGAAGACTAGCCATTGGTTTACAAATAAGAAATCCTGATTTAAGCCAAAAGTTAACTCCAAGATATTCAGATTTTCTAAAGCAGTGGGGAAAGAGAGATCCACACTTTTGCCAAAGAGTTCATGATAAACTTACTGAACTTGTTCAATTAGCTAAAAACAGCAAACAGAAAAGTAGATCTTATTCTTTCGAGTCAATGAATCGagaaaaaagacattttattcaCGAATATTGTGAGCATTTTGGGGTGGATAGTGCAGCTTATGACATGGAACCCAACAGGAATATTGTGGCTACAGCTATAAAGGATAAATCTTGGTTACCTAGTATgagtttatttgaatttttgcagAGGGAAAACGGTCAGAGAAGAGTTCCCGGACCGTTTTTGGGTCGAGGTGCGAGTGGCAAAACTGAAACAGTATCTTTAAAGTTGCCTAGCAGAGTACAAAGGCCAAATACACCTCCTAATGAAATTGTTAACAATTTCAGATCatag
- Protein Sequence
- MSYDNQATRNPSISFPSEENYFSRGSQHLNVNDQRGIQSNNPVDISNSTLEPTAREFIPTSVQNGAVRKRSQYQNKIRDNKDHGNWRNKYGSGRTFNSSRNTYPNKSTRENSFSSNYQADASEHSSSLDHQLRNSDDNQEINFDIDDIQNEGEGEKHSASSSSRIYGQSKRYDNSYQGKSRSNYNEKYSKNYEDKRSNNYTRHNSNFSYSNDDSGTRRNQNHKKGGYKTYYDSRSSQKSKEGSSSSNWRRADTNSDKDSVRMVKTRKKLDAASQRERLVEMLNRRTLECLVCCDKIKNSDKVWSCILCYHIFHLNCVVEWAKSSKIENGWRCPACQNVCSEVPKKYRCYCGKITEPRYEPGVVPHSCGEMCLRKGRNCEHKCSIQCHPGPCPDCTIMISKSCGCGSTKQMVKCSTDVDIICDAICNKVLECGLHCCQQICHPGDCQLCDKIILQECYCAKEGRKVPCCGEYKGKTQYNCGEICGKMLSCGNHHCQQLCHEGPCEVCPKDVNVIKSCPCGKTLLSEPRLSCLDSIPCCEKICGRVLQCGQPSAPHRCENKCHDGPCPPCSKNTFVRCRCGHMDKELPCQKLTSKADDARCEKKCTKKRLCGKHRCNQLCCIELEHICPLPCNHVLTCGQHRCGRTCHSGRCPPCMETSFEELYCECGASVLYPPIPCGTRPPNCSKPCSRPRPCGHEVNHSCHTGPCPPCTVLCKRWCYGHHEQRSAIPCHQENFSCGLPCGKDLPCGRHRCVKPCHDGPCPTPCKQPCTMPRELCGHICGRPCHDSPCPESSCKQNVPVTCQCGLQKSTRPCLDVADEFINIQMAQLKEKMGNLATTSTVDLTDILNGPKKPTILKILECTEECRVLDRNRRLAIGLQIRNPDLSQKLTPRYSDFLKQWGKRDPHFCQRVHDKLTELVQLAKNSKQKSRSYSFESMNREKRHFIHEYCEHFGVDSAAYDMEPNRNIVATAIKDKSWLPSMSLFEFLQRENGQRRVPGPFLGRGASGKTETVSLKLPSRVQRPNTPPNEIVNNFRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387741;
- 90% Identity
- -
- 80% Identity
- -