Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725353.1:15012588-15020303[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.3 13.1 0.4 1 23 123 146 123 146 0.97

2 12 0.00022 0.037 15.9 1.0 2 23 149 170 149 170 0.98

3 12 3.3e-05 0.0056 18.5 1.4 1 23 180 202 180 202 0.98

4 12 2.9e-06 0.00049 21.9 0.9 1 23 208 230 208 230 0.99

5 12 3.2e-05 0.0055 18.6 5.7 1 23 236 259 236 259 0.96

6 12 0.094 16 7.7 3.5 2 23 277 297 276 297 0.97

7 12 0.0027 0.45 12.5 6.6 1 23 304 326 304 326 0.97

8 12 2e-05 0.0034 19.2 0.1 1 23 332 354 332 354 0.95

9 12 0.00029 0.049 15.6 2.7 1 23 360 382 360 382 0.97

10 12 2.2e-06 0.00038 22.2 0.4 1 23 410 432 410 432 0.95

11 12 1e-07 1.7e-05 26.5 1.2 1 23 438 461 438 461 0.97

12 12 2.1e-05 0.0035 19.2 3.3 1 23 467 490 467 490 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.3	13.1	0.4	1	23	123	146	123	146	0.97
2	12	0.00022	0.037	15.9	1.0	2	23	149	170	149	170	0.98
3	12	3.3e-05	0.0056	18.5	1.4	1	23	180	202	180	202	0.98
4	12	2.9e-06	0.00049	21.9	0.9	1	23	208	230	208	230	0.99
5	12	3.2e-05	0.0055	18.6	5.7	1	23	236	259	236	259	0.96
6	12	0.094	16	7.7	3.5	2	23	277	297	276	297	0.97
7	12	0.0027	0.45	12.5	6.6	1	23	304	326	304	326	0.97
8	12	2e-05	0.0034	19.2	0.1	1	23	332	354	332	354	0.95
9	12	0.00029	0.049	15.6	2.7	1	23	360	382	360	382	0.97
10	12	2.2e-06	0.00038	22.2	0.4	1	23	410	432	410	432	0.95
11	12	1e-07	1.7e-05	26.5	1.2	1	23	438	461	438	461	0.97
12	12	2.1e-05	0.0035	19.2	3.3	1	23	467	490	467	490	0.97

Sequence Information

Coding Sequence: atgaaaactaaaatacaagtaactctaaataatttttcaaaaatatgcaGAATATGTCTTCTTTCCAATGAATTAATGCCGATAAATTCACCAGACACAATCAGAGTTTTTAAGGAAATCACAAATATTgagGTTAAAAATGATGATCAACTTCctaaaaatatctgtaaaagTTGTTTACAATTTCTCGAGGAAATTCGACTTTTCATTGAGAATtctaaacataattattcaatTCTCCTTTTAGTATTAAATGAAAAcgataattgcaataatttgaCTATATTTGATCAAAATGAAGATACTAAAGACAGTTTGTTAAATTCTGAAACTGAAACTAAAgaggaaattgataaaaatccaaattttcaatgtgcacaatgtaatattaaatttgatttaaaaaaactattaattttacatatcAAACAAGTTCACGGTAGAAAATGTGATATATGTAAAAAGGgatttaaTTCAAACTTGGCACTTTTAAAACATAAGAAAATACATAgtgggaaaaaacgaaaaataaataattataattgtacTGAATGTGATCGAATTTTAACATCACATTCTGCGTTGGATAATCATATGAAAACTCATACTGGAGATAGACcttataaatgtttatattgtgataaaaatttcGCATTTTCTGGAAGTCTTACAGTACATACTCGTATTCACACtggacaaACTCCTTATAAATGTACAATTTGTAATAAAGAATACTGCAGCTCAAGTAGTCTTAAgaaacacaaagaaaaaaaacattttgatggttctaatgaaaaaaattacaatttagaagatttagaaaaagtacaatgcaaaatttgtgaaaaaatgttaCACAAACACGGCTTTGGTACACATATGAGGATTCATACAAATGAAAGAAAAGAATTTATTTGTCGGTTCTGTTCTAAGCATTTTAAGAAAATGTCTCATTTAGATAGACATGTAAGGATTCACACAggtgagCGACCATTCGTGTGCGTAGTTTGCAAAAAACCTTTCACACAAGAAGGCGACTTAAAAAGACACTGGGTAATTCACTCGGGTCAAAAAGAATTCCAGTGCCAACATTGCGGCAAGTTATATTTCACAAAAAGCGCTTTGGACACTCACATTACTAACCATACaggtacaaaaaaaacaacaaacattGACGCATCTTTAATTCAAAACGATAAAATTTCACAACCCATTGAGCAGAGATCGTTCTTGTGTACAGTCTGTGGAAAATCATTTACAGCTAGTAATAGCTTGAAGGTGCATATAAGATTGCATACTGGAgattgtccttttgtttgtacTTATTGTGGTAAAGCTTATACTAATACAAGTAATTTAAAAAGACATGTTATGAGAAATCATACTTTAGAAAAACCTTATGTTTGTATGATTTGTCATAAAGGATTTCACGATTCAACAAATCTAAAGCGACATGTTAATAGGGTACATTCCGTGCTTGAAACAAGAGATAGAAATGAAgatagtattattttaaatgaagaaaatatttaa
Protein Sequence: MKTKIQVTLNNFSKICRICLLSNELMPINSPDTIRVFKEITNIEVKNDDQLPKNICKSCLQFLEEIRLFIENSKHNYSILLLVLNENDNCNNLTIFDQNEDTKDSLLNSETETKEEIDKNPNFQCAQCNIKFDLKKLLILHIKQVHGRKCDICKKGFNSNLALLKHKKIHSGKKRKINNYNCTECDRILTSHSALDNHMKTHTGDRPYKCLYCDKNFAFSGSLTVHTRIHTGQTPYKCTICNKEYCSSSSLKKHKEKKHFDGSNEKNYNLEDLEKVQCKICEKMLHKHGFGTHMRIHTNERKEFICRFCSKHFKKMSHLDRHVRIHTGERPFVCVVCKKPFTQEGDLKRHWVIHSGQKEFQCQHCGKLYFTKSALDTHITNHTGTKKTTNIDASLIQNDKISQPIEQRSFLCTVCGKSFTASNSLKVHIRLHTGDCPFVCTYCGKAYTNTSNLKRHVMRNHTLEKPYVCMICHKGFHDSTNLKRHVNRVHSVLETRDRNEDSIILNEENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047631;
90% Identity: iTF_01047631;
80% Identity: iTF_01047631;