Ntra041601.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725353.1:15012588-15020303[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3 2.2e+03 0.3 0.3 18 28 149 159 147 164 0.87 2 11 3.3 3.1e+03 -0.2 2.8 10 41 170 201 161 203 0.74 3 11 0.091 85 4.8 0.2 18 29 209 220 205 230 0.81 4 11 0.37 3.4e+02 2.8 6.1 16 43 235 259 226 260 0.80 5 11 0.006 5.6 8.6 2.6 5 36 258 291 255 297 0.73 6 11 0.26 2.4e+02 3.3 4.9 6 38 293 322 292 327 0.81 7 11 4.3 4e+03 -0.6 0.5 6 28 322 343 317 350 0.73 8 11 0.21 1.9e+02 3.6 1.7 15 29 358 372 346 386 0.71 9 11 0.33 3.1e+02 3.0 0.2 18 39 411 429 402 433 0.76 10 11 9.7e-07 0.0009 20.7 3.8 18 43 439 461 432 462 0.93 11 11 1.2e-05 0.011 17.2 1.8 18 44 468 491 464 491 0.91
Sequence Information
- Coding Sequence
- atgaaaactaaaatacaagtaactctaaataatttttcaaaaatatgcaGAATATGTCTTCTTTCCAATGAATTAATGCCGATAAATTCACCAGACACAATCAGAGTTTTTAAGGAAATCACAAATATTgagGTTAAAAATGATGATCAACTTCctaaaaatatctgtaaaagTTGTTTACAATTTCTCGAGGAAATTCGACTTTTCATTGAGAATtctaaacataattattcaatTCTCCTTTTAGTATTAAATGAAAAcgataattgcaataatttgaCTATATTTGATCAAAATGAAGATACTAAAGACAGTTTGTTAAATTCTGAAACTGAAACTAAAgaggaaattgataaaaatccaaattttcaatgtgcacaatgtaatattaaatttgatttaaaaaaactattaattttacatatcAAACAAGTTCACGGTAGAAAATGTGATATATGTAAAAAGGgatttaaTTCAAACTTGGCACTTTTAAAACATAAGAAAATACATAgtgggaaaaaacgaaaaataaataattataattgtacTGAATGTGATCGAATTTTAACATCACATTCTGCGTTGGATAATCATATGAAAACTCATACTGGAGATAGACcttataaatgtttatattgtgataaaaatttcGCATTTTCTGGAAGTCTTACAGTACATACTCGTATTCACACtggacaaACTCCTTATAAATGTACAATTTGTAATAAAGAATACTGCAGCTCAAGTAGTCTTAAgaaacacaaagaaaaaaaacattttgatggttctaatgaaaaaaattacaatttagaagatttagaaaaagtacaatgcaaaatttgtgaaaaaatgttaCACAAACACGGCTTTGGTACACATATGAGGATTCATACAAATGAAAGAAAAGAATTTATTTGTCGGTTCTGTTCTAAGCATTTTAAGAAAATGTCTCATTTAGATAGACATGTAAGGATTCACACAggtgagCGACCATTCGTGTGCGTAGTTTGCAAAAAACCTTTCACACAAGAAGGCGACTTAAAAAGACACTGGGTAATTCACTCGGGTCAAAAAGAATTCCAGTGCCAACATTGCGGCAAGTTATATTTCACAAAAAGCGCTTTGGACACTCACATTACTAACCATACaggtacaaaaaaaacaacaaacattGACGCATCTTTAATTCAAAACGATAAAATTTCACAACCCATTGAGCAGAGATCGTTCTTGTGTACAGTCTGTGGAAAATCATTTACAGCTAGTAATAGCTTGAAGGTGCATATAAGATTGCATACTGGAgattgtccttttgtttgtacTTATTGTGGTAAAGCTTATACTAATACAAGTAATTTAAAAAGACATGTTATGAGAAATCATACTTTAGAAAAACCTTATGTTTGTATGATTTGTCATAAAGGATTTCACGATTCAACAAATCTAAAGCGACATGTTAATAGGGTACATTCCGTGCTTGAAACAAGAGATAGAAATGAAgatagtattattttaaatgaagaaaatatttaa
- Protein Sequence
- MKTKIQVTLNNFSKICRICLLSNELMPINSPDTIRVFKEITNIEVKNDDQLPKNICKSCLQFLEEIRLFIENSKHNYSILLLVLNENDNCNNLTIFDQNEDTKDSLLNSETETKEEIDKNPNFQCAQCNIKFDLKKLLILHIKQVHGRKCDICKKGFNSNLALLKHKKIHSGKKRKINNYNCTECDRILTSHSALDNHMKTHTGDRPYKCLYCDKNFAFSGSLTVHTRIHTGQTPYKCTICNKEYCSSSSLKKHKEKKHFDGSNEKNYNLEDLEKVQCKICEKMLHKHGFGTHMRIHTNERKEFICRFCSKHFKKMSHLDRHVRIHTGERPFVCVVCKKPFTQEGDLKRHWVIHSGQKEFQCQHCGKLYFTKSALDTHITNHTGTKKTTNIDASLIQNDKISQPIEQRSFLCTVCGKSFTASNSLKVHIRLHTGDCPFVCTYCGKAYTNTSNLKRHVMRNHTLEKPYVCMICHKGFHDSTNLKRHVNRVHSVLETRDRNEDSIILNEENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047657;
- 90% Identity
- iTF_01047657;
- 80% Identity
- iTF_01047657;