Ntri006791.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000011.1:3381327-3385351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.32 19 5.9 0.6 2 23 184 206 183 206 0.94 2 14 0.012 0.72 10.3 2.0 1 23 218 241 218 241 0.97 3 14 1.1 63 4.2 3.3 1 23 302 325 302 325 0.96 4 14 0.0019 0.11 12.9 0.5 2 23 355 377 354 377 0.97 5 14 0.00021 0.012 15.9 0.1 3 23 382 402 381 402 0.97 6 14 1.7e-06 0.0001 22.4 0.9 1 23 421 443 421 443 0.94 7 14 0.00019 0.012 16.0 1.8 1 20 486 505 486 508 0.95 8 14 0.0021 0.13 12.7 1.6 3 23 568 589 567 589 0.97 9 14 2.6 1.5e+02 3.0 0.4 1 21 595 617 595 621 0.91 10 14 0.00021 0.012 15.9 1.3 2 23 656 678 655 678 0.97 11 14 1.7 1e+02 3.5 1.0 3 23 813 834 812 834 0.90 12 14 0.015 0.88 10.0 0.1 1 23 840 862 840 862 0.96 13 14 0.0013 0.077 13.4 0.2 2 21 868 887 867 888 0.90 14 14 0.0092 0.55 10.7 1.4 1 23 915 937 915 937 0.99
Sequence Information
- Coding Sequence
- ATGGGGTCCGACATGATGAGTCTCTGTCGGCTCTGTCTCATGGAAAACACCATCATGTTGCCAATCTTCGGCGAGGATGGCAAACACCGCAGAATCAGAGAAATGATCAAAGAATCGCTCAACATCGCGTTGTTCCAGACAGACCCTCTGCCCAGAAAAATCTGCTGCAAGTGCTACTTCAAGCTGCAACAAGCCAATGAGTTGAAGTCGGACTGCCAAAAGAGCACCAAGGTCCTCATCAACCACATGAATGCACAGCGTTCGGCTGACGCTGCCAAAATGATTAAGACACTCAACTATCAattgcaaataTTGCACGGAAATGCGCCTCCTGGTGAACCTCAGAAGGAACCTGAAGCTTTTGGTCCATCCAGAGTCGTCGTTGCCTCTGCCAGTGGCGGCGTTGGGTCCTCAAGCACCAACCACTTCCCACAATCAATCAGGCCTGCTATTCACACCCCCTCAACCTCAAACCAACAACAAATGAGAAACCTCTATCGAGTTGTGCCTTCGAGTCGCATGAAATTCCGGCTACGCAAGCCATCCGTACCGTGCGGAGTGTGCGGCAAGCTTTTCTTGAGCAAGAAATCAGCGAGCGCACATATGCACAAAAACCACTCTATTGATGAGGTCAACAACATTTGCACAAACTACAAGTGCACGGTTTGCTTCCGTGGGTTTGAAACATTGattggattaaatttgcaCAGGCACCGCAATCATCGCCTACCCCCGTTTAGCAGTGTACACCGAGGAGCCGGCACTCAGGCCCGGTCAGTACAGCAAATGCAGCAGCAACGCCAAGCAGCATCGTCGACAGCACTGCAGCCACAGGTGCAGCTTGCGCCAGTTCATACGCCTCGACTGATTTTGCCTAAAGACCCCGAGCAAAAGTCCGACACTCATGAGTGTCATCTTTGCTTCCGAATCTGCAAAAGTGaaggaattttgaaaatgcacaTTGCCACGGTGCataaggaaataaattcagcGGGTCAAAGACTCAGCATCGATGCTGGACCCGAGGCAGCTTCGTCCGAAAACCCGGCTTTGGATAACCTCAAGTGCTCCTTGTGCCATCAGCCATTCCGTAATGTCAACGGCCTAGTGGGTCATCTACGAACGGCCCACGGTAAACCAAGCTGTGCTATCTGTCTGGAAATATTCTCCACCCAGGAAGATTTGAACGCCCACAGGCAGACACACAAGCCTGGGTATAGCGAGCAGCAGGCGGAGAAGAAAATCCCACCACCGGACGTTTTCACTTGCCCCATATGTGGCAAGTCCTTTGACAACTCCACCTCACTGTCTAGACACAAGGGCTACCACACCAAAATGGGCCCGAATTGGTCTCCAAGTGTTGGGTCAACCTCAAATTCCACTGTGTCCTCACCTACACCAAAATCGACAACTTATCGTCAGTCTATTATTGAATCAGAAAGTCCAAGGAAGGTCTTTACATGTGACATATGTGGAAAGAAGTTTGACAACAATTTGTCTCTTGCTCGGCATAGGGCTTGCCATGCCAAATATGGTGCCCAAAGGTCGCTGATTCCTCCCCAGAGGCAAATTTCCCCACCCAAACCGGCATCAGATGACTACGAACCGGTGGAAAAGAAGCCTGTCCTCGATGACCAGGGTAAAATTGTGGACAGAGTATCCTTGCAGAAACTGAAAAGCAACTCCACCACAATACCATTCTGCCTGTACTGCAAAAAGATTTACGAATCGCAGGACAAACTCTGGGAGCACATCTGCACCATGCACCCAAACGATCCAAGGTACCGCTGTCAGGATTCGGGCTGCCTTCGGGTTTTCTTCAGTGGTACAGGTTTCCGGAGCCACCAGACGGCACAGGGCCACAACGCGCCACCCGAGACAGCCAACAGCAACAAGTCTGTCGATAGTGGCCCCAGCATGGTGTTCCTCAGCTCCGACACATCCCCTGTTGtaggcagcagcagcaagtgCCAGATTTGCATGCGAAAGTTTTCAAACATCAACAACTTGCGGCGGCACATCAAAATGGCGCACAGAAATCAGTCGAGCTTTATGTCCAAGCAGATTGTCCGACACAATCCCTCCTCGATTGCCTCCATGTATGGCAGGAAAATTGGGCGTGTACTTTGTCGATACTGTCCCAAATATCTTAGCTCCAAGTACATAAGCGAGCATGAAAAGATGCACAGAATTCGTGGAGACAAACCCAGAGCGGCCAGGGACAATGGTCAACAGTCGCAAGAAGTAGAGGGTCCGTCCCAAGTTGACGAAGGAGAGGGCAATTTGGGCATGGAGCCCGAGGAAGATTTGGAGGAAGACGAAGAACAAGAGGATACCCCAATAAACTCCTCTTTTGAGATGGACATTCCAGACTCGATAACGATGACACAAAATCAagacttcaaattaaacaggAAAATTCCCAGAGCCCCCAATTGCAAGTACTGCGGTCACACTGCGCTTTCCTTCTACGAGCTGCAGGAGCACCTCGACTCCAACCACCCAGGCCAGATTTATTACGTGTGTGAAGGCTGCCCTGAAATTTACTTTGACCGGAAAACCCTCGTGAGCCACAACATTGTGCATACTCGAGTGTACCTCAACTGCAAATATTGCAACAAGAGCTTTGCTCGGCCATTAGCGTTGCGGGGCCATGAGAACCGGTGCCTGTACTTGCAAAAGAAGCAGCAAGGACTTATGCCTGAGAGTGGCGAGGGTGCATCGTCGTCCACTTCCTATTCCTACACTTGCGAATTCTGTAATGATAAGTTCAATGATTCCATCACATTTGTGCAACATTTGCAGACTCATGCGACAACAAACTAG
- Protein Sequence
- MGSDMMSLCRLCLMENTIMLPIFGEDGKHRRIREMIKESLNIALFQTDPLPRKICCKCYFKLQQANELKSDCQKSTKVLINHMNAQRSADAAKMIKTLNYQLQILHGNAPPGEPQKEPEAFGPSRVVVASASGGVGSSSTNHFPQSIRPAIHTPSTSNQQQMRNLYRVVPSSRMKFRLRKPSVPCGVCGKLFLSKKSASAHMHKNHSIDEVNNICTNYKCTVCFRGFETLIGLNLHRHRNHRLPPFSSVHRGAGTQARSVQQMQQQRQAASSTALQPQVQLAPVHTPRLILPKDPEQKSDTHECHLCFRICKSEGILKMHIATVHKEINSAGQRLSIDAGPEAASSENPALDNLKCSLCHQPFRNVNGLVGHLRTAHGKPSCAICLEIFSTQEDLNAHRQTHKPGYSEQQAEKKIPPPDVFTCPICGKSFDNSTSLSRHKGYHTKMGPNWSPSVGSTSNSTVSSPTPKSTTYRQSIIESESPRKVFTCDICGKKFDNNLSLARHRACHAKYGAQRSLIPPQRQISPPKPASDDYEPVEKKPVLDDQGKIVDRVSLQKLKSNSTTIPFCLYCKKIYESQDKLWEHICTMHPNDPRYRCQDSGCLRVFFSGTGFRSHQTAQGHNAPPETANSNKSVDSGPSMVFLSSDTSPVVGSSSKCQICMRKFSNINNLRRHIKMAHRNQSSFMSKQIVRHNPSSIASMYGRKIGRVLCRYCPKYLSSKYISEHEKMHRIRGDKPRAARDNGQQSQEVEGPSQVDEGEGNLGMEPEEDLEEDEEQEDTPINSSFEMDIPDSITMTQNQDFKLNRKIPRAPNCKYCGHTALSFYELQEHLDSNHPGQIYYVCEGCPEIYFDRKTLVSHNIVHTRVYLNCKYCNKSFARPLALRGHENRCLYLQKKQQGLMPESGEGASSSTSYSYTCEFCNDKFNDSITFVQHLQTHATTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046502;
- 90% Identity
- iTF_01046502;
- 80% Identity
- iTF_01046502;