Ntri000084.1
Basic Information
- Insect
- Neocloeon triangulifer
- Gene Symbol
- -
- Assembly
- GCA_031216515.1
- Location
- JASKYO010000001.1:924757-927916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.9e-05 0.0052 17.0 0.2 2 23 396 419 395 419 0.95 2 10 0.033 1.9 9.0 4.3 1 23 425 449 425 449 0.98 3 10 0.00038 0.022 15.1 2.5 3 23 457 479 455 479 0.92 4 10 0.028 1.6 9.2 0.2 3 23 487 509 486 509 0.94 5 10 0.00043 0.026 14.9 2.9 1 23 516 538 516 538 0.98 6 10 0.00021 0.012 15.9 0.9 3 23 547 569 546 569 0.94 7 10 4.6e-05 0.0027 17.9 1.2 1 23 575 599 575 599 0.96 8 10 5.4e-05 0.0032 17.7 0.2 1 23 605 629 605 629 0.99 9 10 0.0066 0.39 11.1 0.0 2 23 636 659 635 659 0.96 10 10 0.89 52 4.5 3.3 1 23 668 693 668 693 0.94
Sequence Information
- Coding Sequence
- ATGTCGTGGAAGGAAGTGCTGAAGCCGTCGATAGCCGAGTACGAGCGGCAGACCGTGGGCTTGTCCGTTTGCTCGGACGGACAGGACAGCAACGAGGGCTTCGGCGAGGACAAGATGTGTTGCGGAATGGAGATGCTGCCCGAGTCTTCCGCGTCCACCTATGAGCTGGTCTGCGTGGACGAGTGGCTGAAGAGCCGCACCGAGTCAATGTCCAGTATGGACATGGACGTGTCCATGACTGACGCCGCGGCCAAGGAAAACACAAATCTGTCCGAGTTGGATCAGTTCTTGACGCCGAAGGGAGCCGTCGACCTGTGCATGGCCAACGAGAATCAGAATTTAAGCGAGGATGCGTCCAGTCTGCTTCTCTCGGATGATTTGCTTTGCAAGCCGGACAAACCCAGAAAAACCACTCTGGAGACACCCTTGTTTTTGGTTGAGGAGGAGTCTCGGCTGAAGGATGAAGATGGTCTGGTCGGACGAAGGGGTAGTTGGACGGAACACCTGGAAAAGGACAAGTCGAATTGGGACCTGATGTCGAACACAAGCCAGAAGAGCCACGAGTTAGTCAAGGAGGTCGACTTTCCGGAGTTCAATCTGGTGCCTCCGTTCGACCAGATATGTTCGATTGAAATGCCGGACAGCAAAGAGCTTATTGAAGATCCGCTAATGGACAAAGTTGTCGAAGTTTTGCCGAAAGACTTACAAAAGGAGCAGAACAGAGATCCCCTTATGACCAGCGTCCAGGATGAAGATAATGCCACCGAGACAGTTTTAATCaaTTCGGTTTTGGACACGAGTGATTCTATGAAAAATGAGGAGGATTTGGCGATTATTGCCATATCGGCAAATTCGGATGAAAATACAGCACAAATAATCATCAGCACTGGTCCGACAGTTTTCCAGGCAGAGGAGAGCGTTAAGAAGCAAGATGCTATCAACGTTGAAATTGTTCAGGACCAAAATGAGGAGCTTGGAAATGCTGATGAAATTATGTCtgacgaagaagaagaagaagaggaggaTGAGGATAATGAAAATTCTCTAATGATTGCTAAGTCAGACGAAGAGGAGGATGAAGTGAATGAAGaaGATGAGCAGCCGCTGATTGAAGCCCTGGCTGCAATTGGCATCAAAGTCGAATCGCTCATGTATGTTAAAACGGACAGTCAACATCGAATGTGGATGTGTCCGGTTAAAGACTGCAGGAAAATGTATTCAAAGCAAAGCGCCCTAAAGGTCCACATTCTCAGTCATTATGGTCTAAGACCATTCaagTGTGACTACGAAGGCTGTTTTTGGTCGTTCTACACACATTTTAGACTGAAAAGACACAAAGCAACCCACTTAAAGAAAAAGGACTTtctgtgcACATACGAGGGGTGTGGTAGGAAATTTACCACGATCTACAACTTGCACACTCATCAGAAGCTGCACGAAAGGCCAGCGGAGAACGTGTGCACAGTAGCTGGTTGTGAAGCGAGTTTCCAGACAAAACGGAAACTGGAGCTGCACCTGAAGGAGCACGACTCGAGTCATGCCCCTTACAAGTGTCATTACTGCAAGCGAGGCTATTACTCGATCAATTCGCTCAACATGCATATCAGGGGCCACGAGCACAAGGAGGAGGAGGTCATTTGCCAGTGGGCTGGCTGTGGAAAAAGGTTCGACAAGCCTTGCAGACTGAGGGCACACATGCGATCTCACACCGGAGACAGGCCCTACATTTGCACATTTGAAGGCTGCAAGTGGTCGTTTTCGACTGCCAGCAAGCTGAGGAGACACTCGCAGAAACACACGGATGAACGCAATTTTAAGTGTCCCATGGATGGATGTCCTAAGGCCTTTTTACGGCCAGAACACCTGCGCGAACACATTCTCACTCACCAAGGCACCAAAAACTGGGAATGTCCAGTTGCAGGCTGTGAGGCTAGGTTTACTGCCAAGAGTAGTTTGTATGTGCATGTGAAGAAACACAAATCCCCCACAACCAAGGACATGTTCGTTTGTCCTTTCGAAAACTGCAATCACAAGTACCTACGGAAAGCAAGCTTGAGGCACCATGTTGTGAAAAATCATCAGGTGCAGCTTGTGGATGATTCTTCAACTGAGAGTCCAGCAGTCTCAAACAATTTCTTGGCTTTTCCCATTGACGGACAGGAGATTCTTATAGgCCAAACATTCTCAGTGTCCGATCCCATTGAAAATGCCGTTGTTCTTTCTACAATCAACCCAGCTGACATAATGCTTTCCAGCGACCCAGAGTTGCCAACTTTGGTTCAAGCAGACGACTCCCACACAAACCTGAATAGCATCAATGTGACCAGTAATCTCTCTAATTTATTGGCAGAAGAGTCTGAAGATGACAGCCATGTTGGATGTGCCCGCACAAATCTCCCTTTGCCCCTGGTTCCCCGAAAAGCCAACCGCACCACAAATGTTCTACCGGCACCTGCTTTGCTACCCGAAGACATCTTCAACGATTCACTCCTGGTGACACCGCAGGGAATCGAGTTCCAAATCATGCTGGACACCAGACAGAGGGAATTTGCAGAGTCGACCATCAATCTGCGAGACCTTGAGTGA
- Protein Sequence
- MSWKEVLKPSIAEYERQTVGLSVCSDGQDSNEGFGEDKMCCGMEMLPESSASTYELVCVDEWLKSRTESMSSMDMDVSMTDAAAKENTNLSELDQFLTPKGAVDLCMANENQNLSEDASSLLLSDDLLCKPDKPRKTTLETPLFLVEEESRLKDEDGLVGRRGSWTEHLEKDKSNWDLMSNTSQKSHELVKEVDFPEFNLVPPFDQICSIEMPDSKELIEDPLMDKVVEVLPKDLQKEQNRDPLMTSVQDEDNATETVLINSVLDTSDSMKNEEDLAIIAISANSDENTAQIIISTGPTVFQAEESVKKQDAINVEIVQDQNEELGNADEIMSDEEEEEEEDEDNENSLMIAKSDEEEDEVNEEDEQPLIEALAAIGIKVESLMYVKTDSQHRMWMCPVKDCRKMYSKQSALKVHILSHYGLRPFKCDYEGCFWSFYTHFRLKRHKATHLKKKDFLCTYEGCGRKFTTIYNLHTHQKLHERPAENVCTVAGCEASFQTKRKLELHLKEHDSSHAPYKCHYCKRGYYSINSLNMHIRGHEHKEEEVICQWAGCGKRFDKPCRLRAHMRSHTGDRPYICTFEGCKWSFSTASKLRRHSQKHTDERNFKCPMDGCPKAFLRPEHLREHILTHQGTKNWECPVAGCEARFTAKSSLYVHVKKHKSPTTKDMFVCPFENCNHKYLRKASLRHHVVKNHQVQLVDDSSTESPAVSNNFLAFPIDGQEILIGQTFSVSDPIENAVVLSTINPADIMLSSDPELPTLVQADDSHTNLNSINVTSNLSNLLAEESEDDSHVGCARTNLPLPLVPRKANRTTNVLPAPALLPEDIFNDSLLVTPQGIEFQIMLDTRQREFAESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00344597;
- 90% Identity
- -
- 80% Identity
- -