Ntri004562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neocloeon triangulifer
Gene Symbol
-
Assembly
GCA_031216515.1
Location
JASKYO010000007.1:1392211-1395912[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.3e-06 0.00037 20.6 2.7 1 23 295 317 295 317 0.97
2 18 0.00016 0.0097 16.2 2.4 1 20 323 342 323 345 0.94
3 18 8.9e-06 0.00053 20.2 1.4 1 23 351 373 351 373 0.99
4 18 0.00028 0.016 15.5 3.9 1 21 379 399 379 401 0.91
5 18 0.00011 0.0066 16.7 4.7 1 23 407 429 407 429 0.99
6 18 1.7e-05 0.00099 19.3 5.7 1 23 435 457 435 457 0.97
7 18 1.5e-06 8.8e-05 22.6 7.1 1 23 463 485 463 485 0.96
8 18 1.5e-07 9e-06 25.7 3.3 1 23 491 513 491 513 0.98
9 18 6.1e-05 0.0036 17.6 6.7 1 23 519 541 519 541 0.97
10 18 1.8e-05 0.0011 19.2 6.7 1 23 547 569 547 569 0.98
11 18 2.5e-06 0.00015 21.9 3.1 1 23 575 597 575 597 0.98
12 18 2.9e-06 0.00017 21.7 8.0 1 23 603 625 603 625 0.98
13 18 4.7e-05 0.0028 17.9 8.3 1 23 631 653 631 653 0.98
14 18 7.9e-06 0.00047 20.3 7.7 1 23 659 681 659 681 0.98
15 18 0.0018 0.11 12.9 9.2 1 21 687 707 687 709 0.94
16 18 4.3e-05 0.0026 18.0 0.8 1 23 715 737 715 737 0.98
17 18 0.011 0.65 10.5 4.0 1 23 743 765 743 765 0.98
18 18 1.6e-06 9.4e-05 22.5 1.1 1 23 771 793 771 793 0.98

Sequence Information

Coding Sequence
ATGCAAGAATCTAGTCAAGAGGTGTCCGCCGAACCGGACGGAGGAGTCAGCTCGACGGTCATTCTGCACTCCTCCTCAACAACAGATAATGTGACCAAAAGTGTAACCAACGAGACCCAAGCCGGATCTTCGACCACAACCATTCCTAGCTTGGCAAAGTACTGGGTCGtaactaattttttccaagGCCCATCATCACCATACAGCCTTccaattaaaaatGGAAAAGAAACAGAATTATGCACCGTGACTGAGCTGAACATGGCGAGTGGCCAGACCGAAGCTCCTCTAGAAACCATCAACCAGGCTGAGCTGGTGCAGTCCGCTGAGGGCAGTGGGAACCAAATCGAGTTGGCCTCCATCGATTTGAACAAGGAAAAAGTGGAAGCGGCGAACCAACTTCAGCCTCCAGACAGTCTAGTCAGCTGCGAAGTGCAGTGCGATCTCAATTTGTCCGAACAGCAGAATGTGGGACTGGGTCAAAATGGCCAAGAGCAGAACAAAGGCGCTCCGGCCGGCGATAAGGAAGATTCAAAAGAGGAAACTTTCAAAGAAGGCGCCAAACAAGTCGCAATGCTGGgtttttctgATCTCAAGGCGTCTGTTGAGCTTCGGAACATCGACGGCAGCATTTTCAAGCCGATCAATGATCCAGAACTGGCCAAAACCCTGGGCCTCGAGGTGGCCCAGAATTTGTACAAAGTTAATGTAGATGAAATCAACCAGCTGCTCGCGTACCACGAGGTGTTCGGGAAACTGCAGACTGACATCACAATTGCACCCTCGAGCTCCGCAGCCCCCGCCCTTGCCAACAACACCAATTCCATCCAAATCATGCCTCCTCCGTCGAAATCCTCAGAGCTGGACCAACTCGGCACGGCTCACTCTTGTGAACTCTGCGGCAAAATGTTTTCGTATCGGTATCAACTCATAGTGCATCGAAGATACCACACTGAAAAGAAGCCTTTCACCTGTCAAGTTTGTGGAAAAGCATTCAACAGCAACAATGAGCTAAGCAGACACGGAAAGTGTCATTTAGGTGGTAGCTTGTATACCTGCAGCGTCTGTTTTCACGTTTTCGCCAACGCGAGTGGCCTCGAGAGGCACCAGAAGCGCCACTCCGGGGACAAACCGTACCTTTGCGGCACCTGCGGAAAGTCTTTCGCCAGGAAGGAGCACCTTGAGAACCACAACCGGTGCCACACGGGCGAGACGCCGTACCGCTGCCAGTTCTGTGCCAAAACGTTCACACGCAAGGAGCACATGGTGAACCACGTACGCAAGCACACGGGTGACACGCCGCACCGGTGTGACATCTGCAAAAAGTCTTTCACGAGGAAGGAGCACTTCACAAACCACGTCATGTGGCACACCGGAGAGACGCCCCACGCGTGCCACGTGTGCGGCAAAAAGTACACCAGGAAGGAGCACCTCAACAACCACATGAGGAGCCACACCAACGACACCCCGTTTCGGTGTCAAATTTGTGGAAAGTCTTTCACGAGAAAGGAGCATTTCACGAATCACATTATGTGGCACACAGGCGAGACGCCTCATCGgtgtGACTTCTGCTCGAAGACCTTCACCAGAAAAGAGCACTTGCTGAACCACGTGAGGCAACACACAGGCGAGTCCCCGCACCGATGCAGCTTCTGCTCAAAATCGTTTACGAGAAAGGAGCATCTAGTCAACCACATCCGCCAGCACACGGGCGAAACCCCCTTTCGATGCCAGTTTTGTCCAAAAGCCTTCACCAGAAAGGACCACCTGGTGAACCATGTGAGGCAACACACTGGCGAGTCGCCCCACAAGTGCCAGTACTGCACAAAAACCTTTACAAGGAAGGAGCACCTGACCAACCACATACGACAGCACACCGGCGAGTCTCCTCACAGGTGCCATTTTTGTTCGAAAACCTTCACTCGAAAGGAGCATCTAGTCAACCACGTTCGGATCCATACAGGCGAGTCCCCTCATCGGTGTGACTTCTGCAACAAGACTTTTACAAGAAAAGAGCACCTGACCAACCATTTGCGGCAGCACACGGGGGAAACGCCTCACTGCTGCAATGTCTGCTCGAAGCCATTCACGAGAAAAGAGCATCTTTTGAACCACATGCGGTGCCACACTGgcGAGCGCCCGTTTTCCTGCACCGAGTGTGGAAAGTCCTTTCCTCTGAAGGGCAACCTTCTGTTTCACCAACGGTCCCACCAGAAAGAGCGGCCGTTCAGTTGTGATGTCTGCGGCAAGGATTTCATGTGCAAAGGACATTTGGTGAGTCACAAGAGGAGTCACGACTCGGAAAAGAATTTCGTTTGCGGGACCTGCGGCAAATCCTTTGTCGAGAAGACCAACATGCTTCGGCACATGAAGAAGCACGGCCAAAGCGCCTCCGAGTCCTCGGACCAAAATCCACCCCCGCCACAGCAGCCCGAAGAGCCGACGCCACTGGCCAACCAGCTGGTTTTGGCGCCGAGTGTGCCCGTTGTTGCGGCATcttattga
Protein Sequence
MQESSQEVSAEPDGGVSSTVILHSSSTTDNVTKSVTNETQAGSSTTTIPSLAKYWVVTNFFQGPSSPYSLPIKNGKETELCTVTELNMASGQTEAPLETINQAELVQSAEGSGNQIELASIDLNKEKVEAANQLQPPDSLVSCEVQCDLNLSEQQNVGLGQNGQEQNKGAPAGDKEDSKEETFKEGAKQVAMLGFSDLKASVELRNIDGSIFKPINDPELAKTLGLEVAQNLYKVNVDEINQLLAYHEVFGKLQTDITIAPSSSAAPALANNTNSIQIMPPPSKSSELDQLGTAHSCELCGKMFSYRYQLIVHRRYHTEKKPFTCQVCGKAFNSNNELSRHGKCHLGGSLYTCSVCFHVFANASGLERHQKRHSGDKPYLCGTCGKSFARKEHLENHNRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKSFTRKEHFTNHVMWHTGETPHACHVCGKKYTRKEHLNNHMRSHTNDTPFRCQICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRKEHLVNHIRQHTGETPFRCQFCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKTFTRKEHLTNHIRQHTGESPHRCHFCSKTFTRKEHLVNHVRIHTGESPHRCDFCNKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLNHMRCHTGERPFSCTECGKSFPLKGNLLFHQRSHQKERPFSCDVCGKDFMCKGHLVSHKRSHDSEKNFVCGTCGKSFVEKTNMLRHMKKHGQSASESSDQNPPPPQQPEEPTPLANQLVLAPSVPVVAASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00344522;
90% Identity
-
80% Identity
-